Variant report

Variant	rs7073150
Chromosome Location	chr10:98750650-98750651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:98750323-98751251	K562	blood:	n/a	n/a
2	POLR2A	chr10:98750424-98750693	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98749781..98752150-chr10:98752568..98754778,2	K562	blood:

Variant related genes	Relation type
ENSG00000231025	TF binding region

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10437452	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188929	1.00[ASN][1000 genomes]
rs11188939	0.85[CEU][hapmap]
rs11188954	0.86[EUR][1000 genomes]
rs11188955	0.86[EUR][1000 genomes]
rs11188956	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188959	0.86[EUR][1000 genomes]
rs11188967	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11188971	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11188978	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188999	1.00[ASN][1000 genomes]
rs12240946	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241405	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241564	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243551	0.87[EUR][1000 genomes]
rs12244490	1.00[ASN][1000 genomes]
rs12246067	0.85[CEU][hapmap]
rs12247344	0.82[EUR][1000 genomes]
rs12248349	1.00[ASN][1000 genomes]
rs12249381	0.86[EUR][1000 genomes]
rs12249427	0.86[EUR][1000 genomes]
rs12250548	1.00[ASN][1000 genomes]
rs12252424	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12252435	0.85[CEU][hapmap]
rs12254525	1.00[ASN][1000 genomes]
rs12257413	0.86[EUR][1000 genomes]
rs12258355	0.86[EUR][1000 genomes]
rs12258469	0.86[EUR][1000 genomes]
rs12263331	0.86[EUR][1000 genomes]
rs12264014	1.00[ASN][1000 genomes]
rs12264950	1.00[ASN][1000 genomes]
rs12265242	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12265606	1.00[ASN][1000 genomes]
rs12267926	0.85[CEU][hapmap]
rs12268216	0.86[EUR][1000 genomes]
rs12268272	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13376965	0.86[EUR][1000 genomes]
rs17112175	0.82[EUR][1000 genomes]
rs17112190	0.86[EUR][1000 genomes]
rs2183449	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439735	0.86[EUR][1000 genomes]
rs28505353	1.00[ASN][1000 genomes]
rs28758432	0.86[EUR][1000 genomes]
rs4394767	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs55855950	1.00[ASN][1000 genomes]
rs56327223	1.00[ASN][1000 genomes]
rs56867696	0.86[EUR][1000 genomes]
rs57501540	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58270704	1.00[ASN][1000 genomes]
rs58376960	0.84[EUR][1000 genomes]
rs58409956	1.00[ASN][1000 genomes]
rs59938221	0.82[EUR][1000 genomes]
rs59999388	0.86[EUR][1000 genomes]
rs60576681	0.86[EUR][1000 genomes]
rs61492214	0.86[EUR][1000 genomes]
rs6584101	1.00[ASN][1000 genomes]
rs7071211	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072273	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7081197	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082316	0.86[EUR][1000 genomes]
rs7082838	1.00[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085822	0.86[EUR][1000 genomes]
rs7085851	0.86[EUR][1000 genomes]
rs7086875	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090441	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090690	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090880	1.00[ASN][1000 genomes]
rs7098175	0.81[AFR][1000 genomes]
rs72821721	1.00[ASN][1000 genomes]
rs72821744	1.00[ASN][1000 genomes]
rs72821759	1.00[ASN][1000 genomes]
rs73318637	1.00[ASN][1000 genomes]
rs73318641	1.00[ASN][1000 genomes]
rs73320607	1.00[ASN][1000 genomes]
rs74153734	1.00[ASN][1000 genomes]
rs7893325	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894138	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895914	1.00[ASN][1000 genomes]
rs7906294	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920238	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921885	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98741200-98758000	Weak transcription	K562	blood
2	chr10:98741600-98751400	Weak transcription	Small Intestine	intestine
3	chr10:98742000-98757000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr10:98742200-98750800	Weak transcription	HMEC	breast
5	chr10:98742200-98752200	Weak transcription	Colonic Mucosa	Colon
6	chr10:98742200-98754600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:98742200-98754600	Weak transcription	Right Ventricle	heart
8	chr10:98742200-98754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:98742200-98755000	Weak transcription	Left Ventricle	heart
10	chr10:98742400-98751200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:98742400-98751400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:98742400-98752400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:98742600-98750800	Weak transcription	A549	lung
14	chr10:98742600-98752600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:98742600-98752800	Weak transcription	Gastric	stomach
16	chr10:98742600-98755800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:98742600-98756000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:98742600-98756800	Weak transcription	Lung	lung
19	chr10:98743000-98758600	Weak transcription	Spleen	Spleen
20	chr10:98743800-98758000	Weak transcription	Fetal Brain Female	brain
21	chr10:98744400-98752200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:98744600-98751000	Weak transcription	Fetal Intestine Small	intestine
23	chr10:98745000-98758400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:98745200-98756000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:98745200-98760400	Weak transcription	Primary T cells from cord blood	blood
26	chr10:98745400-98751400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:98745400-98752200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:98745400-98755600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:98745400-98756600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr10:98745400-98757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:98746400-98752200	Weak transcription	Thymus	Thymus
32	chr10:98746400-98752600	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:98746400-98755000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:98746400-98755600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:98746400-98758600	Weak transcription	Esophagus	oesophagus
36	chr10:98746600-98752000	Weak transcription	Fetal Thymus	thymus
37	chr10:98746600-98752200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr10:98746600-98755000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:98747200-98752200	Weak transcription	Pancreas	Pancrea
40	chr10:98747600-98751800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr10:98747800-98752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:98748000-98751400	Weak transcription	Placenta	Placenta
43	chr10:98748200-98758200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr10:98748600-98751200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:98748800-98751200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:98748800-98754000	Weak transcription	Psoas Muscle	Psoas
47	chr10:98748800-98754600	Weak transcription	Ovary	ovary
48	chr10:98748800-98755800	Weak transcription	Aorta	Aorta
49	chr10:98748800-98757600	Weak transcription	Brain Germinal Matrix	brain
50	chr10:98749000-98750800	Weak transcription	Fetal Lung	lung

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