Variant report

Variant	rs12265606
Chromosome Location	chr10:98563189-98563190
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98557607..98559906-chr10:98561974..98564519,2	K562	blood:
2	chr10:98558078..98559906-chr10:98563019..98564889,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10437452	1.00[ASN][1000 genomes]
rs11188929	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188978	1.00[ASN][1000 genomes]
rs12240946	1.00[ASN][1000 genomes]
rs12241405	1.00[ASN][1000 genomes]
rs12241564	1.00[ASN][1000 genomes]
rs12243114	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12244490	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248349	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250548	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254525	1.00[ASN][1000 genomes]
rs12264014	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264950	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183449	1.00[ASN][1000 genomes]
rs28505353	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57501540	1.00[ASN][1000 genomes]
rs57807455	0.84[AFR][1000 genomes]
rs58270704	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58409956	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584101	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071211	1.00[ASN][1000 genomes]
rs7073150	1.00[ASN][1000 genomes]
rs7081197	1.00[ASN][1000 genomes]
rs7082838	1.00[ASN][1000 genomes]
rs7086875	1.00[ASN][1000 genomes]
rs7090441	1.00[ASN][1000 genomes]
rs7090690	1.00[ASN][1000 genomes]
rs7090880	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318637	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318641	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73320607	1.00[ASN][1000 genomes]
rs74153734	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893325	1.00[ASN][1000 genomes]
rs7894138	1.00[ASN][1000 genomes]
rs7895914	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906294	1.00[ASN][1000 genomes]
rs7920238	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	esv3422724	chr10:98558962-98563560	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98561600-98564400	Weak transcription	Stomach Mucosa	stomach
2	chr10:98562800-98563200	ZNF genes & repeats	Placenta	Placenta
3	chr10:98562800-98563200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:98562800-98563400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:98563000-98563200	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr10:98563000-98563400	Enhancers	Hela-S3	cervix

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