Variant report

Variant	rs7894138
Chromosome Location	chr10:98689778-98689779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98686080..98689186-chr10:98689456..98691604,3	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10437452	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188929	1.00[ASN][1000 genomes]
rs11188937	0.86[EUR][1000 genomes]
rs11188939	0.84[EUR][1000 genomes]
rs11188940	0.86[EUR][1000 genomes]
rs11188947	0.86[EUR][1000 genomes]
rs11188954	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188955	0.93[EUR][1000 genomes]
rs11188956	0.93[EUR][1000 genomes]
rs11188959	0.93[EUR][1000 genomes]
rs11188967	0.93[EUR][1000 genomes]
rs11188971	1.00[EUR][1000 genomes]
rs11188978	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188999	1.00[ASN][1000 genomes]
rs12240946	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241405	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241564	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242330	0.84[EUR][1000 genomes]
rs12243551	0.95[EUR][1000 genomes]
rs12244490	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246067	0.86[EUR][1000 genomes]
rs12247344	0.89[EUR][1000 genomes]
rs12248349	1.00[ASN][1000 genomes]
rs12249381	0.93[EUR][1000 genomes]
rs12249427	0.93[EUR][1000 genomes]
rs12249891	0.86[EUR][1000 genomes]
rs12250548	1.00[ASN][1000 genomes]
rs12252424	0.93[EUR][1000 genomes]
rs12252435	0.86[EUR][1000 genomes]
rs12254525	1.00[ASN][1000 genomes]
rs12256424	0.86[EUR][1000 genomes]
rs12257413	0.93[EUR][1000 genomes]
rs12258355	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12258469	0.93[EUR][1000 genomes]
rs12259265	0.86[EUR][1000 genomes]
rs12261278	0.86[EUR][1000 genomes]
rs12261881	0.86[EUR][1000 genomes]
rs12262784	0.86[EUR][1000 genomes]
rs12263331	0.93[EUR][1000 genomes]
rs12264014	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264950	1.00[ASN][1000 genomes]
rs12265242	0.93[EUR][1000 genomes]
rs12265606	1.00[ASN][1000 genomes]
rs12266068	0.86[EUR][1000 genomes]
rs12266185	0.86[EUR][1000 genomes]
rs12267926	0.86[EUR][1000 genomes]
rs12268216	0.93[EUR][1000 genomes]
rs12268272	0.91[EUR][1000 genomes]
rs13376965	0.93[EUR][1000 genomes]
rs17112175	0.89[EUR][1000 genomes]
rs17112190	0.93[EUR][1000 genomes]
rs2104785	0.86[EUR][1000 genomes]
rs2183449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439735	0.93[EUR][1000 genomes]
rs28505353	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28758432	0.93[EUR][1000 genomes]
rs4394767	0.98[EUR][1000 genomes]
rs56327223	1.00[ASN][1000 genomes]
rs56867696	0.93[EUR][1000 genomes]
rs57501540	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57716318	0.86[EUR][1000 genomes]
rs58270704	1.00[ASN][1000 genomes]
rs58376960	0.91[EUR][1000 genomes]
rs58409956	1.00[ASN][1000 genomes]
rs59751908	0.84[EUR][1000 genomes]
rs59938221	0.89[EUR][1000 genomes]
rs59999388	0.93[EUR][1000 genomes]
rs60576681	0.93[EUR][1000 genomes]
rs61492214	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6584101	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071211	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072273	0.93[EUR][1000 genomes]
rs7073150	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081197	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082316	0.93[EUR][1000 genomes]
rs7082838	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085822	0.93[EUR][1000 genomes]
rs7085851	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7086875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090441	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090690	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090880	1.00[ASN][1000 genomes]
rs72821721	1.00[ASN][1000 genomes]
rs72821744	1.00[ASN][1000 genomes]
rs73318637	1.00[ASN][1000 genomes]
rs73318641	1.00[ASN][1000 genomes]
rs73320607	1.00[ASN][1000 genomes]
rs74153734	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893325	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893564	0.82[EUR][1000 genomes]
rs7894418	0.86[EUR][1000 genomes]
rs7895914	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906294	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910221	0.86[EUR][1000 genomes]
rs7918085	0.86[EUR][1000 genomes]
rs7920238	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921193	0.86[EUR][1000 genomes]
rs7921216	0.86[EUR][1000 genomes]
rs7921885	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98624800-98696000	Weak transcription	K562	blood
3	chr10:98637400-98708800	Weak transcription	NH-A	brain
4	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
5	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
6	chr10:98650200-98708800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:98653400-98714200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:98657400-98705800	Weak transcription	NHDF-Ad	bronchial
9	chr10:98659000-98714600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:98663000-98695000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:98663000-98720400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:98663400-98691200	Weak transcription	Small Intestine	intestine
13	chr10:98663600-98714800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:98664400-98696400	Weak transcription	NHLF	lung
15	chr10:98664800-98714000	Weak transcription	Colonic Mucosa	Colon
16	chr10:98665000-98714800	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:98666000-98714600	Weak transcription	Fetal Brain Female	brain
18	chr10:98667200-98708800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:98668800-98698800	Weak transcription	Fetal Kidney	kidney
20	chr10:98669400-98698600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:98669400-98714400	Weak transcription	HMEC	breast
22	chr10:98670400-98707800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:98671200-98714600	Weak transcription	Ovary	ovary
24	chr10:98671200-98719800	Weak transcription	Fetal Brain Male	brain
25	chr10:98671400-98708200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:98672400-98714600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr10:98674800-98696800	Weak transcription	Brain Germinal Matrix	brain
28	chr10:98675200-98708600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:98675600-98714600	Weak transcription	Fetal Thymus	thymus
30	chr10:98675800-98689800	Weak transcription	Pancreas	Pancrea
31	chr10:98675800-98694800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:98675800-98703800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:98675800-98708200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:98675800-98708800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr10:98675800-98714600	Weak transcription	Lung	lung
36	chr10:98675800-98714600	Weak transcription	Spleen	Spleen
37	chr10:98675800-98714800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:98676200-98695400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:98676200-98696800	Weak transcription	Thymus	Thymus
40	chr10:98677600-98705000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:98677800-98711800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:98678600-98689800	Weak transcription	Gastric	stomach
43	chr10:98678800-98696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:98679600-98695000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:98679600-98698000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr10:98679800-98711600	Weak transcription	Placenta	Placenta
47	chr10:98679800-98724800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:98680800-98708800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr10:98681600-98691200	Weak transcription	Left Ventricle	heart
50	chr10:98681600-98695000	Weak transcription	Fetal Stomach	stomach

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