Variant report

Variant	rs7894418
Chromosome Location	chr10:98594701-98594702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98593714..98596338-chr10:98621792..98624067,2	K562	blood:
2	chr10:98594492..98596521-chr10:98602633..98604736,3	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10437452	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11188929	0.80[EUR][1000 genomes]
rs11188937	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188939	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188940	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188954	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188955	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188956	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188959	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188967	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188971	0.86[EUR][1000 genomes]
rs11188978	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12241405	0.84[EUR][1000 genomes]
rs12241564	0.81[EUR][1000 genomes]
rs12242330	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243551	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244490	0.96[EUR][1000 genomes]
rs12246067	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247344	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249381	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249427	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252424	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252435	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256424	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257413	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258355	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258469	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261278	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261881	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263331	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264014	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12265242	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266068	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266185	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267926	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268216	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268272	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13376965	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112175	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112190	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183449	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28439735	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505353	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28758432	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394767	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56867696	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57408003	0.86[ASN][1000 genomes]
rs57501540	0.84[EUR][1000 genomes]
rs57716318	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58270704	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58376960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59751908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59938221	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59999388	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60576681	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492214	0.93[EUR][1000 genomes]
rs6584101	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7071211	0.82[EUR][1000 genomes]
rs7072273	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082316	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082838	0.88[EUR][1000 genomes]
rs7085822	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085851	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7086875	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7090441	0.84[EUR][1000 genomes]
rs7090690	0.82[EUR][1000 genomes]
rs7090880	0.80[EUR][1000 genomes]
rs73318641	0.80[EUR][1000 genomes]
rs74153734	0.96[EUR][1000 genomes]
rs7893144	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7893564	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894138	0.86[EUR][1000 genomes]
rs7895914	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7906294	0.86[EUR][1000 genomes]
rs7910221	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920238	0.82[EUR][1000 genomes]
rs7921193	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921216	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921885	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98591000-98594800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:98591000-98594800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:98591400-98594800	Active TSS	NHLF	lung
4	chr10:98591400-98595600	Active TSS	GM12878-XiMat	blood
5	chr10:98591600-98594800	Active TSS	Fetal Intestine Small	intestine
6	chr10:98593600-98595600	Active TSS	Brain Germinal Matrix	brain
7	chr10:98593600-98596800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:98593800-98594800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:98593800-98594800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:98593800-98594800	Weak transcription	Left Ventricle	heart
11	chr10:98593800-98594800	Weak transcription	Pancreas	Pancrea
12	chr10:98593800-98594800	Active TSS	HepG2	liver
13	chr10:98593800-98595400	Weak transcription	Psoas Muscle	Psoas
14	chr10:98593800-98595600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:98593800-98595600	Weak transcription	Spleen	Spleen
16	chr10:98593800-98596200	Weak transcription	Gastric	stomach
17	chr10:98593800-98596400	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:98593800-98596600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:98593800-98596600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr10:98593800-98596800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:98593800-98597000	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr10:98593800-98599600	Weak transcription	Lung	lung
23	chr10:98593800-98600600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:98593800-98600600	Weak transcription	Esophagus	oesophagus
25	chr10:98593800-98601800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:98593800-98602800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:98593800-98606800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:98593800-98624200	Weak transcription	Colonic Mucosa	Colon
29	chr10:98594000-98596400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:98594000-98596400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:98594000-98597800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:98594000-98604200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:98594200-98594800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:98594200-98594800	Weak transcription	Small Intestine	intestine
35	chr10:98594200-98594800	Active TSS	HSMM	muscle
36	chr10:98594200-98595200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:98594200-98595400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:98594200-98595400	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:98594200-98595400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:98594200-98595400	Weak transcription	Stomach Mucosa	stomach
41	chr10:98594200-98595600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:98594200-98595600	Weak transcription	Aorta	Aorta
43	chr10:98594200-98595600	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:98594200-98595600	Weak transcription	Placenta	Placenta
45	chr10:98594200-98595600	Weak transcription	Right Ventricle	heart
46	chr10:98594200-98595800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:98594200-98595800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:98594200-98596000	Enhancers	Rectal Smooth Muscle	rectum
49	chr10:98594200-98596200	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr10:98594200-98596600	Enhancers	Primary T helper cells fromperipheralblood	blood

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