Variant report

Variant	rs7090880
Chromosome Location	chr10:98559018-98559019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98553768..98555619-chr10:98557263..98560148,2	K562	blood:
2	chr10:98557607..98559906-chr10:98561974..98564519,2	K562	blood:
3	chr10:98558078..98559906-chr10:98563019..98564889,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10437452	1.00[ASN][1000 genomes]
rs11188929	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188937	0.80[EUR][1000 genomes]
rs11188940	0.80[EUR][1000 genomes]
rs11188947	0.80[EUR][1000 genomes]
rs11188978	1.00[ASN][1000 genomes]
rs12240946	1.00[ASN][1000 genomes]
rs12241405	1.00[ASN][1000 genomes]
rs12241564	1.00[ASN][1000 genomes]
rs12243114	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12244490	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246067	0.80[EUR][1000 genomes]
rs12248349	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249891	0.80[EUR][1000 genomes]
rs12250548	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252435	0.80[EUR][1000 genomes]
rs12254525	1.00[ASN][1000 genomes]
rs12256424	0.80[EUR][1000 genomes]
rs12259265	0.80[EUR][1000 genomes]
rs12261278	0.80[EUR][1000 genomes]
rs12261881	0.80[EUR][1000 genomes]
rs12262784	0.80[EUR][1000 genomes]
rs12264014	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264950	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265606	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266068	0.80[EUR][1000 genomes]
rs12266185	0.80[EUR][1000 genomes]
rs12267926	0.80[EUR][1000 genomes]
rs2104785	0.80[EUR][1000 genomes]
rs2183449	1.00[ASN][1000 genomes]
rs28505353	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57262746	0.82[EUR][1000 genomes]
rs57501540	1.00[ASN][1000 genomes]
rs57716318	0.80[EUR][1000 genomes]
rs57807455	0.88[AFR][1000 genomes]
rs58270704	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58409956	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584101	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071211	1.00[ASN][1000 genomes]
rs7073150	1.00[ASN][1000 genomes]
rs7081197	1.00[ASN][1000 genomes]
rs7082838	1.00[ASN][1000 genomes]
rs7086875	1.00[ASN][1000 genomes]
rs7090441	1.00[ASN][1000 genomes]
rs7090690	1.00[ASN][1000 genomes]
rs73318637	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318641	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73320607	1.00[ASN][1000 genomes]
rs74153734	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893325	1.00[ASN][1000 genomes]
rs7894138	1.00[ASN][1000 genomes]
rs7894418	0.80[EUR][1000 genomes]
rs7895914	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906294	1.00[ASN][1000 genomes]
rs7910221	0.80[EUR][1000 genomes]
rs7918085	0.80[EUR][1000 genomes]
rs7920238	1.00[ASN][1000 genomes]
rs7921193	0.80[EUR][1000 genomes]
rs7921216	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	esv3422724	chr10:98558962-98563560	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98546000-98561200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98550800-98561200	Weak transcription	Primary B cells from cord blood	blood
3	chr10:98554200-98561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:98554800-98561200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:98555000-98561200	Weak transcription	Hela-S3	cervix
6	chr10:98555000-98561200	Weak transcription	Osteobl	bone
7	chr10:98555200-98559600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:98555200-98561200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:98555200-98561200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:98555400-98559200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr10:98555400-98560400	Enhancers	Fetal Intestine Small	intestine
12	chr10:98555400-98560600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:98555400-98560800	Enhancers	Fetal Intestine Large	intestine
14	chr10:98555400-98561200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:98557200-98560200	Enhancers	HepG2	liver
16	chr10:98557600-98560200	Enhancers	Duodenum Mucosa	Duodenum
17	chr10:98557800-98561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:98558400-98560200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr10:98558600-98560800	Enhancers	Placenta	Placenta
20	chr10:98558800-98559200	Enhancers	Colonic Mucosa	Colon
21	chr10:98558800-98560000	Weak transcription	Fetal Kidney	kidney
22	chr10:98558800-98560800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:98558800-98561200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:98558800-98561200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:98558800-98561200	Weak transcription	Stomach Mucosa	stomach

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