Variant report

Variant	rs12250548
Chromosome Location	chr10:98569734-98569735
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10437452	1.00[ASN][1000 genomes]
rs11188929	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188937	1.00[CEU][hapmap]
rs11188939	1.00[CEU][hapmap]
rs11188954	1.00[CEU][hapmap]
rs11188959	1.00[CEU][hapmap]
rs11188978	1.00[ASN][1000 genomes]
rs12240946	1.00[ASN][1000 genomes]
rs12241405	1.00[ASN][1000 genomes]
rs12241564	1.00[ASN][1000 genomes]
rs12242141	0.85[YRI][hapmap]
rs12242330	1.00[CEU][hapmap]
rs12243114	0.84[EUR][1000 genomes]
rs12243551	1.00[CEU][hapmap]
rs12244490	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246067	1.00[CEU][hapmap]
rs12248349	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252435	1.00[CEU][hapmap]
rs12254525	1.00[ASN][1000 genomes]
rs12258355	1.00[CEU][hapmap]
rs12262784	1.00[CEU][hapmap]
rs12264014	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264950	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12265606	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267926	1.00[CEU][hapmap]
rs12268216	1.00[CEU][hapmap]
rs17112175	1.00[CEU][hapmap]
rs17112190	1.00[CEU][hapmap]
rs2183449	1.00[ASN][1000 genomes]
rs28505353	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394767	1.00[CEU][hapmap]
rs57501540	1.00[ASN][1000 genomes]
rs58270704	1.00[ASN][1000 genomes]
rs58409956	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6584101	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071211	1.00[ASN][1000 genomes]
rs7073150	1.00[ASN][1000 genomes]
rs7081197	1.00[ASN][1000 genomes]
rs7082838	1.00[ASN][1000 genomes]
rs7085822	1.00[CEU][hapmap]
rs7086875	1.00[ASN][1000 genomes]
rs7090441	1.00[ASN][1000 genomes]
rs7090690	1.00[ASN][1000 genomes]
rs7090880	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318637	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318641	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73320607	1.00[ASN][1000 genomes]
rs74153734	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893325	1.00[ASN][1000 genomes]
rs7894138	1.00[ASN][1000 genomes]
rs7895914	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906294	1.00[ASN][1000 genomes]
rs7910221	1.00[CEU][hapmap]
rs7918085	1.00[CEU][hapmap]
rs7920238	1.00[ASN][1000 genomes]
rs7921885	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98563400-98576800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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