The 2.0 version of rSNPBase

Variant report

Variant rs56951671
Chromosome Location chr2:54803741-54803742
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54794400-54804200 Weak transcription Ovary ovary
2 chr2:54795800-54807000 Enhancers HUES6 Cell Line embryonic stem cell
3 chr2:54795800-54807600 Enhancers Duodenum Smooth Muscle Duodenum
4 chr2:54796000-54804400 Enhancers Adipose Nuclei Adipose
5 chr2:54796000-54807600 Enhancers Brain Angular Gyrus brain
6 chr2:54796200-54806200 Enhancers Right Atrium heart
7 chr2:54796200-54806400 Enhancers Brain Anterior Caudate brain
8 chr2:54796200-54806800 Enhancers Pancreas Pancrea
9 chr2:54796400-54808800 Enhancers Skeletal Muscle Male skeletal muscle
10 chr2:54796800-54806800 Enhancers Skeletal Muscle Female skeletal muscle
11 chr2:54796800-54807400 Enhancers Psoas Muscle Psoas
12 chr2:54796800-54810200 Enhancers Sigmoid Colon Sigmoid Colon
13 chr2:54796800-54810600 Enhancers Small Intestine intestine
14 chr2:54797200-54805000 Enhancers Spleen Spleen
15 chr2:54797400-54808400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr2:54797800-54807000 Enhancers iPS-15b Cell Line embryonic stem cell
17 chr2:54798600-54805600 Enhancers NHDF-Ad bronchial
18 chr2:54798800-54806400 Enhancers Primary hematopoietic stem cells short term culture blood
19 chr2:54798800-54806600 Weak transcription Fetal Brain Male brain
20 chr2:54799400-54805000 Enhancers Left Ventricle heart
21 chr2:54800000-54803800 Enhancers Fetal Heart heart
22 chr2:54800000-54807400 Enhancers Right Ventricle heart
23 chr2:54800200-54803800 Enhancers Fetal Intestine Large intestine
24 chr2:54800200-54805800 Enhancers NHLF lung
25 chr2:54800200-54806400 Enhancers Stomach Mucosa stomach
26 chr2:54800400-54805000 Genic enhancers Fetal Muscle Leg muscle
27 chr2:54800400-54805600 Genic enhancers HSMM muscle
28 chr2:54800600-54805400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr2:54800800-54803800 Weak transcription Brain Germinal Matrix brain
30 chr2:54800800-54804200 Weak transcription Aorta Aorta
31 chr2:54800800-54807000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr2:54801000-54803800 Weak transcription Colon Smooth Muscle Colon
33 chr2:54801000-54804800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr2:54801400-54803800 Enhancers Primary hematopoietic stem cells blood
35 chr2:54801600-54803800 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr2:54801600-54803800 Enhancers Placenta Placenta
37 chr2:54801600-54806200 Enhancers Primary T helper cells fromperipheralblood blood
38 chr2:54801600-54806600 Enhancers Primary T killer naive cells fromperipheralblood blood
39 chr2:54801600-54808600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
40 chr2:54801800-54803800 Weak transcription Rectal Smooth Muscle rectum
41 chr2:54801800-54804000 Enhancers Primary T cells fromperipheralblood blood
42 chr2:54801800-54804000 Weak transcription Fetal Kidney kidney
43 chr2:54801800-54804400 Genic enhancers HepG2 liver
44 chr2:54801800-54806400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
45 chr2:54801800-54806400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr2:54801800-54806600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr2:54801800-54806600 Enhancers Primary T regulatory cells fromperipheralblood blood
48 chr2:54801800-54806600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr2:54801800-54807400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
50 chr2:54801800-54811000 Enhancers Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015