The 2.0 version of rSNPBase

Variant report

Variant rs60293507
Chromosome Location chr2:54889430-54889431
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54838800-54893400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
2 chr2:54839400-54895000 Strong transcription Primary neutrophils fromperipheralblood blood
3 chr2:54841200-54897800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr2:54842600-54892000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr2:54846400-54895600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr2:54846400-54896600 Strong transcription Primary hematopoietic stem cells short term culture blood
7 chr2:54846600-54898000 Strong transcription Dnd41 blood
8 chr2:54846800-54895400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr2:54848600-54892400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr2:54861800-54898600 Strong transcription Primary T regulatory cells fromperipheralblood blood
11 chr2:54862200-54896600 Strong transcription Primary hematopoietic stem cells blood
12 chr2:54862400-54892800 Strong transcription HUES48 Cell Line embryonic stem cell
13 chr2:54862600-54892400 Strong transcription HUES6 Cell Line embryonic stem cell
14 chr2:54862600-54892400 Strong transcription HUES64 Cell Line embryonic stem cell
15 chr2:54862600-54893400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr2:54862600-54898400 Strong transcription Primary T cells fromperipheralblood blood
17 chr2:54863000-54892000 Strong transcription Rectal Mucosa Donor 29 rectum
18 chr2:54863000-54892200 Strong transcription iPS-20b Cell Line embryonic stem cell
19 chr2:54863000-54892400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr2:54863000-54895000 Strong transcription Duodenum Mucosa Duodenum
21 chr2:54863000-54898600 Strong transcription Primary T helper cells fromperipheralblood blood
22 chr2:54863000-54899400 Strong transcription Primary T cells from cord blood blood
23 chr2:54863600-54897000 Strong transcription Primary T helper naive cells from peripheral blood blood
24 chr2:54863800-54897400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr2:54863800-54898600 Strong transcription Primary T helper naive cells fromperipheralblood blood
26 chr2:54864200-54893600 Strong transcription Fetal Muscle Trunk muscle
27 chr2:54865400-54892800 Strong transcription Sigmoid Colon Sigmoid Colon
28 chr2:54865400-54898400 Strong transcription Primary T killer naive cells fromperipheralblood blood
29 chr2:54865800-54898200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
30 chr2:54866000-54892800 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr2:54866400-54892400 Strong transcription Rectal Mucosa Donor 31 rectum
32 chr2:54866400-54897200 Strong transcription Primary B cells from cord blood blood
33 chr2:54867200-54892200 Strong transcription HSMMtube muscle
34 chr2:54867200-54892400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr2:54867200-54892400 Strong transcription NHEK skin
36 chr2:54867200-54892800 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr2:54867200-54892800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr2:54867200-54897800 Strong transcription Primary B cells from peripheral blood blood
39 chr2:54867200-54898200 Strong transcription Primary T helper cells PMA-I stimulated --
40 chr2:54868400-54892400 Strong transcription Fetal Intestine Large intestine
41 chr2:54868800-54898600 Strong transcription iPS-18 Cell Line embryonic stem cell
42 chr2:54869000-54892000 Strong transcription Primary monocytes fromperipheralblood blood
43 chr2:54869000-54896400 Strong transcription Colonic Mucosa Colon
44 chr2:54869400-54892000 Strong transcription Fetal Lung lung
45 chr2:54869600-54893400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr2:54869600-54898600 Strong transcription Fetal Thymus thymus
47 chr2:54869800-54890200 Strong transcription Primary T killer memory cells from peripheral blood blood
48 chr2:54869800-54891400 Strong transcription Placenta Placenta
49 chr2:54869800-54891800 Strong transcription H9 Cell Line embryonic stem cell
50 chr2:54869800-54895200 Strong transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015