Variant report
| Variant | rs58924163 |
|---|---|
| Chromosome Location | chr2:54929463-54929464 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:54927376..54930220-chr2:54933382..54935285,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1431973 | 1.00[AMR][1000 genomes] |
| rs1431974 | 1.00[AMR][1000 genomes] |
| rs55633042 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56196255 | 1.00[AMR][1000 genomes] |
| rs56951671 | 1.00[AMR][1000 genomes] |
| rs57406175 | 1.00[AMR][1000 genomes] |
| rs57539931 | 1.00[AMR][1000 genomes] |
| rs57926982 | 1.00[AMR][1000 genomes] |
| rs58204287 | 1.00[AMR][1000 genomes] |
| rs58987524 | 1.00[AMR][1000 genomes] |
| rs59061110 | 1.00[AMR][1000 genomes] |
| rs59402608 | 1.00[AMR][1000 genomes] |
| rs60293507 | 1.00[AMR][1000 genomes] |
| rs60542617 | 1.00[AMR][1000 genomes] |
| rs60611759 | 1.00[AMR][1000 genomes] |
| rs6740921 | 1.00[AMR][1000 genomes] |
| rs73934512 | 1.00[AMR][1000 genomes] |
| rs73934514 | 1.00[AMR][1000 genomes] |
| rs73934808 | 1.00[AMR][1000 genomes] |
| rs73934809 | 1.00[AMR][1000 genomes] |
| rs73937514 | 1.00[AMR][1000 genomes] |
| rs73938306 | 1.00[AMR][1000 genomes] |
| rs7570695 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv33638 | chr2:54765256-55109455 | Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv582024 | chr2:54894649-54999712 | Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:54922400-54935800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
