Variant report
| Variant | rs56957450 |
|---|---|
| Chromosome Location | chr6:88022715-88022716 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:88021221..88024496-chr6:88030560..88033914,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226524 | Chromatin interaction |
| ENSG00000111850 | Chromatin interaction |
| ENSG00000164411 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1359982 | 0.90[EUR][1000 genomes] |
| rs16878991 | 0.90[EUR][1000 genomes] |
| rs16878999 | 0.90[EUR][1000 genomes] |
| rs16879012 | 0.90[EUR][1000 genomes] |
| rs56010354 | 0.90[EUR][1000 genomes] |
| rs56305030 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs57552196 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs57596999 | 0.90[EUR][1000 genomes] |
| rs57631457 | 0.86[EUR][1000 genomes] |
| rs58321177 | 0.90[EUR][1000 genomes] |
| rs58646133 | 0.90[EUR][1000 genomes] |
| rs59127357 | 0.90[EUR][1000 genomes] |
| rs59597706 | 0.90[EUR][1000 genomes] |
| rs60628059 | 0.90[EUR][1000 genomes] |
| rs61174011 | 0.90[EUR][1000 genomes] |
| rs73488008 | 0.83[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73488017 | 0.90[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
