Variant report

Variant	rs56305030
Chromosome Location	chr6:88021948-88021949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88019935..88022359-chr6:88023543..88025384,2	K562	blood:
2	chr6:88019790..88022706-chr6:88023142..88026051,3	K562	blood:
3	chr6:88021221..88024496-chr6:88030560..88033914,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111850	Chromatin interaction
ENSG00000226524	Chromatin interaction
ENSG00000164411	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10498960	1.00[AFR][1000 genomes]
rs1359982	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878734	0.82[AFR][1000 genomes]
rs16878736	0.82[AFR][1000 genomes]
rs16878809	0.87[AFR][1000 genomes]
rs16878856	0.94[AFR][1000 genomes]
rs16878863	0.94[AFR][1000 genomes]
rs16878942	1.00[AFR][1000 genomes]
rs16878991	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878999	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879012	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41273281	0.94[AFR][1000 genomes]
rs41273283	0.94[AFR][1000 genomes]
rs45620640	0.90[EUR][1000 genomes]
rs56010354	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56193950	0.90[AFR][1000 genomes]
rs56678817	0.81[AFR][1000 genomes]
rs56957450	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57043501	1.00[AFR][1000 genomes]
rs57552196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57596999	1.00[EUR][1000 genomes]
rs57631457	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58321177	1.00[EUR][1000 genomes]
rs58327183	0.87[AFR][1000 genomes]
rs58646133	1.00[EUR][1000 genomes]
rs58731649	1.00[AFR][1000 genomes]
rs59127357	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59150116	0.91[AFR][1000 genomes]
rs59597706	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60544317	0.94[AFR][1000 genomes]
rs60628059	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60845773	0.91[AFR][1000 genomes]
rs61174011	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61705669	0.91[AFR][1000 genomes]
rs73483799	0.82[AFR][1000 genomes]
rs73485808	0.82[AFR][1000 genomes]
rs73485811	0.82[AFR][1000 genomes]
rs73485820	0.91[AFR][1000 genomes]
rs73485826	0.90[AFR][1000 genomes]
rs73485828	0.88[AFR][1000 genomes]
rs73485831	0.88[AFR][1000 genomes]
rs73488008	0.85[EUR][1000 genomes]
rs73488017	1.00[EUR][1000 genomes]
rs73488048	0.90[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links