Variant report

Variant	rs56678817
Chromosome Location	chr6:88006979-88006980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:88006860-88007191	Hela-S3	cervix:	n/a	chr6:88007014-88007025
2	CEBPB	chr6:88006899-88007168	IMR90	lung:	n/a	n/a
3	JUND	chr6:88006907-88007140	HepG2	liver:	n/a	chr6:88007014-88007025
4	STAT3	chr6:88006852-88007177	MCF10A-Er-Src	breast:	n/a	chr6:88006985-88006996
5	FOS	chr6:88006854-88007169	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr6:88006841-88007199	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr6:88006840-88007215	Hela-S3	cervix:	n/a	n/a
8	STAT3	chr6:88006856-88007178	MCF10A-Er-Src	breast:	n/a	chr6:88006985-88006996
9	FOS	chr6:88006834-88007202	MCF10A-Er-Src	breast:	n/a	n/a
10	TCF7L2	chr6:88006746-88007175	Hela-S3	cervix:	n/a	n/a
11	RCOR1	chr6:88006858-88007166	Hela-S3	cervix:	n/a	n/a
12	STAT3	chr6:88006852-88007176	MCF10A-Er-Src	breast:	n/a	chr6:88006985-88006996
13	STAT3	chr6:88006881-88007160	Hela-S3	cervix:	n/a	chr6:88006985-88006996
14	EP300	chr6:88006890-88007173	Hela-S3	cervix:	n/a	n/a
15	FOS	chr6:88006840-88007198	MCF10A-Er-Src	breast:	n/a	n/a
16	STAT3	chr6:88006901-88007157	MCF10A-Er-Src	breast:	n/a	chr6:88006985-88006996

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87998545..88000520-chr6:88004269..88006989,2	K562	blood:
2	chr6:88001168..88003376-chr6:88006507..88008311,2	K562	blood:

Variant related genes	Relation type
HSPD1P10	TF binding region
ENSG00000164411	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10488045	0.94[EUR][1000 genomes]
rs10498960	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878570	0.88[EUR][1000 genomes]
rs16878622	0.88[EUR][1000 genomes]
rs16878638	0.88[EUR][1000 genomes]
rs16878712	0.94[EUR][1000 genomes]
rs16878713	0.94[EUR][1000 genomes]
rs16878729	0.91[EUR][1000 genomes]
rs16878734	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878736	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878809	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878856	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878863	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878942	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878991	0.81[AFR][1000 genomes]
rs16878999	0.81[AFR][1000 genomes]
rs1925693	0.94[EUR][1000 genomes]
rs41273281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55647962	0.85[EUR][1000 genomes]
rs56193950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56305030	0.81[AFR][1000 genomes]
rs56743579	0.88[EUR][1000 genomes]
rs56847789	0.85[EUR][1000 genomes]
rs56999910	0.88[EUR][1000 genomes]
rs57043501	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57116567	0.88[EUR][1000 genomes]
rs57217108	0.88[EUR][1000 genomes]
rs57421283	0.94[EUR][1000 genomes]
rs57552196	0.81[AFR][1000 genomes]
rs57607342	0.88[EUR][1000 genomes]
rs57962992	0.85[EUR][1000 genomes]
rs58269367	0.94[EUR][1000 genomes]
rs58327183	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58474842	0.94[EUR][1000 genomes]
rs58731649	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58735749	0.94[EUR][1000 genomes]
rs58751410	0.85[EUR][1000 genomes]
rs59138817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59150116	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59214037	0.94[EUR][1000 genomes]
rs59495279	0.88[EUR][1000 genomes]
rs59654654	0.87[EUR][1000 genomes]
rs59875769	0.94[EUR][1000 genomes]
rs60074363	0.94[EUR][1000 genomes]
rs60285195	0.94[EUR][1000 genomes]
rs60544317	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60845773	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60985818	0.81[EUR][1000 genomes]
rs60994855	0.85[EUR][1000 genomes]
rs61047847	0.88[EUR][1000 genomes]
rs61379368	0.94[EUR][1000 genomes]
rs61705669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483720	0.94[EUR][1000 genomes]
rs73483728	0.94[EUR][1000 genomes]
rs73483743	0.94[EUR][1000 genomes]
rs73483749	0.94[EUR][1000 genomes]
rs73483752	0.94[EUR][1000 genomes]
rs73483758	0.94[EUR][1000 genomes]
rs73483760	0.94[EUR][1000 genomes]
rs73483765	0.94[EUR][1000 genomes]
rs73483769	0.94[EUR][1000 genomes]
rs73483771	0.91[EUR][1000 genomes]
rs73483774	0.94[EUR][1000 genomes]
rs73483790	0.94[EUR][1000 genomes]
rs73483796	0.94[EUR][1000 genomes]
rs73483799	0.94[EUR][1000 genomes]
rs73485808	0.94[EUR][1000 genomes]
rs73485811	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485813	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485815	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485820	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485826	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485828	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485831	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73499800	0.88[EUR][1000 genomes]
rs73499802	0.88[EUR][1000 genomes]
rs73501611	0.85[EUR][1000 genomes]
rs73501620	0.88[EUR][1000 genomes]
rs73501623	0.88[EUR][1000 genomes]
rs73501629	0.88[EUR][1000 genomes]
rs73501632	0.88[EUR][1000 genomes]
rs73501636	0.88[EUR][1000 genomes]
rs73501638	0.88[EUR][1000 genomes]
rs73501641	0.88[EUR][1000 genomes]
rs73501658	0.88[EUR][1000 genomes]
rs73501662	0.88[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88006600-88007000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:88006800-88007800	Enhancers	Hela-S3	cervix

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