Variant report

Variant	rs73485849
Chromosome Location	chr6:87992068-87992069
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87985739..87987305-chr6:87991090..87992694,2	K562	blood:
2	chr6:87987743..87990741-chr6:87991579..87994871,3	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10488045	0.94[EUR][1000 genomes]
rs10498960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878570	0.88[EUR][1000 genomes]
rs16878622	0.88[EUR][1000 genomes]
rs16878638	0.88[EUR][1000 genomes]
rs16878712	0.94[EUR][1000 genomes]
rs16878713	0.94[EUR][1000 genomes]
rs16878729	0.91[EUR][1000 genomes]
rs16878734	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878736	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878809	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878856	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878863	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1925693	0.94[EUR][1000 genomes]
rs41273281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273283	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55647962	0.85[EUR][1000 genomes]
rs56193950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56678817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56743579	0.88[EUR][1000 genomes]
rs56847789	0.85[EUR][1000 genomes]
rs56999910	0.88[EUR][1000 genomes]
rs57043501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57116567	0.88[EUR][1000 genomes]
rs57217108	0.88[EUR][1000 genomes]
rs57421283	0.94[EUR][1000 genomes]
rs57607342	0.88[EUR][1000 genomes]
rs57962992	0.85[EUR][1000 genomes]
rs58269367	0.94[EUR][1000 genomes]
rs58327183	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58474842	0.94[EUR][1000 genomes]
rs58731649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58735749	0.94[EUR][1000 genomes]
rs58751410	0.85[EUR][1000 genomes]
rs59138817	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59150116	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59214037	0.94[EUR][1000 genomes]
rs59495279	0.88[EUR][1000 genomes]
rs59654654	0.87[EUR][1000 genomes]
rs59875769	0.94[EUR][1000 genomes]
rs60074363	0.94[EUR][1000 genomes]
rs60285195	0.94[EUR][1000 genomes]
rs60544317	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60845773	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60985818	0.81[EUR][1000 genomes]
rs60994855	0.85[EUR][1000 genomes]
rs61047847	0.88[EUR][1000 genomes]
rs61379368	0.94[EUR][1000 genomes]
rs61705669	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483720	0.94[EUR][1000 genomes]
rs73483728	0.94[EUR][1000 genomes]
rs73483743	0.94[EUR][1000 genomes]
rs73483749	0.94[EUR][1000 genomes]
rs73483752	0.94[EUR][1000 genomes]
rs73483758	0.94[EUR][1000 genomes]
rs73483760	0.94[EUR][1000 genomes]
rs73483765	0.94[EUR][1000 genomes]
rs73483769	0.94[EUR][1000 genomes]
rs73483771	0.91[EUR][1000 genomes]
rs73483774	0.94[EUR][1000 genomes]
rs73483790	0.94[EUR][1000 genomes]
rs73483796	0.94[EUR][1000 genomes]
rs73483799	0.94[EUR][1000 genomes]
rs73485808	0.94[EUR][1000 genomes]
rs73485811	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485813	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485815	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485820	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485826	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485828	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485831	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73499800	0.88[EUR][1000 genomes]
rs73499802	0.88[EUR][1000 genomes]
rs73501611	0.85[EUR][1000 genomes]
rs73501620	0.88[EUR][1000 genomes]
rs73501623	0.88[EUR][1000 genomes]
rs73501629	0.88[EUR][1000 genomes]
rs73501632	0.88[EUR][1000 genomes]
rs73501636	0.88[EUR][1000 genomes]
rs73501638	0.88[EUR][1000 genomes]
rs73501641	0.88[EUR][1000 genomes]
rs73501658	0.88[EUR][1000 genomes]
rs73501662	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2752763	chr6:87981595-88001064	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87970600-87994800	Weak transcription	Fetal Brain Female	brain
2	chr6:87991400-87993400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:87991800-87992800	Enhancers	HMEC	breast
4	chr6:87991800-87993000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:87992000-87992400	Enhancers	NHEK	skin
6	chr6:87992000-87993200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:87992000-87993600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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