Variant report

Variant	rs73501658
Chromosome Location	chr6:87882415-87882416
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87874891..87876823-chr6:87881316..87883233,2	MCF-7	breast:
2	chr6:87863901..87866107-chr6:87880199..87883289,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188994	Chromatin interaction
ENSG00000272008	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10488045	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10498960	0.88[EUR][1000 genomes]
rs16878473	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16878570	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878638	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878729	0.91[EUR][1000 genomes]
rs16878734	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs16878736	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs16878809	0.82[EUR][1000 genomes]
rs16878856	0.88[EUR][1000 genomes]
rs16878863	0.88[EUR][1000 genomes]
rs16878942	0.88[EUR][1000 genomes]
rs1925693	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41273281	0.88[EUR][1000 genomes]
rs41273283	0.88[EUR][1000 genomes]
rs55647962	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs56096438	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56193950	0.88[EUR][1000 genomes]
rs56678817	0.88[EUR][1000 genomes]
rs56743579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56847789	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56947685	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56999910	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57043501	0.88[EUR][1000 genomes]
rs57116567	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57217108	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57421283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57607342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57962992	0.97[EUR][1000 genomes]
rs58032842	1.00[AMR][1000 genomes]
rs58124219	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58269367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58327183	0.88[EUR][1000 genomes]
rs58474842	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58576901	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58731649	0.88[EUR][1000 genomes]
rs58735749	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58751410	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59034165	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59138817	0.88[EUR][1000 genomes]
rs59150116	0.88[EUR][1000 genomes]
rs59214037	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59344869	1.00[AFR][1000 genomes]
rs59495279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59654654	0.87[EUR][1000 genomes]
rs59875769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59964119	1.00[AMR][1000 genomes]
rs60074363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60285195	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60544317	0.85[EUR][1000 genomes]
rs60746078	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60845773	0.88[EUR][1000 genomes]
rs60985818	0.94[EUR][1000 genomes]
rs60994855	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61047847	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61379368	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61705669	0.88[EUR][1000 genomes]
rs73483720	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483728	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483749	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483760	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483765	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483771	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73483774	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483796	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73483799	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485808	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73485811	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73485813	0.94[EUR][1000 genomes]
rs73485815	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73485820	0.88[EUR][1000 genomes]
rs73485826	0.88[EUR][1000 genomes]
rs73485828	0.88[EUR][1000 genomes]
rs73485831	0.88[EUR][1000 genomes]
rs73485848	0.88[EUR][1000 genomes]
rs73485849	0.88[EUR][1000 genomes]
rs73499768	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73499770	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73499771	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73499800	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73499802	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501611	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73501620	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501638	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73501662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73751992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87866600-87883600	Weak transcription	Right Ventricle	heart
2	chr6:87866600-87883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:87866600-87885400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:87866600-87886000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:87866600-87886600	Weak transcription	Aorta	Aorta
6	chr6:87866600-87889800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:87866600-87890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:87866600-87890200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:87867000-87883400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:87867000-87886000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:87867000-87895600	Weak transcription	HSMM	muscle
12	chr6:87867000-87915600	Weak transcription	NH-A	brain
13	chr6:87867200-87883200	Weak transcription	HMEC	breast
14	chr6:87867200-87893400	Weak transcription	Adipose Nuclei	Adipose
15	chr6:87867800-87883000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:87867800-87883400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:87867800-87885800	Weak transcription	Fetal Thymus	thymus
18	chr6:87867800-87886400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:87868000-87933000	Weak transcription	Hela-S3	cervix
20	chr6:87868200-87886000	Weak transcription	Thymus	Thymus
21	chr6:87868200-87889600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:87868400-87883600	Weak transcription	Small Intestine	intestine
23	chr6:87868600-87889800	Weak transcription	Fetal Intestine Large	intestine
24	chr6:87869000-87882800	Weak transcription	Primary B cells from cord blood	blood
25	chr6:87869000-87885200	Weak transcription	Placenta	Placenta
26	chr6:87869400-87885800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:87869600-87884800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:87870000-87882800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:87871400-87883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:87871400-87890000	Weak transcription	Pancreas	Pancrea
31	chr6:87871400-87890200	Weak transcription	Gastric	stomach
32	chr6:87872800-87883000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:87873400-87883200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:87874000-87883000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:87874200-87890000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:87874200-87892600	Weak transcription	NHDF-Ad	bronchial
37	chr6:87874400-87924200	Weak transcription	Fetal Kidney	kidney
38	chr6:87874600-87890000	Weak transcription	Psoas Muscle	Psoas
39	chr6:87875000-87910400	Weak transcription	K562	blood
40	chr6:87875800-87885000	Weak transcription	Left Ventricle	heart
41	chr6:87876200-87883200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr6:87876400-87890200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:87876400-87890600	Weak transcription	NHLF	lung
44	chr6:87876600-87883200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:87876600-87890000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:87877000-87883200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:87877800-87883000	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:87877800-87886200	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr6:87878200-87882800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:87878400-87884200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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