Variant report

Variant	rs56947685
Chromosome Location	chr6:87815232-87815233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87814512..87817505-chr6:87862895..87865178,2	K562	blood:

Variant related genes	Relation type
ENSG00000272008	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10488045	1.00[AMR][1000 genomes]
rs16878473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16878570	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16878622	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16878638	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16878712	1.00[AMR][1000 genomes]
rs16878713	1.00[AMR][1000 genomes]
rs1925693	1.00[AMR][1000 genomes]
rs55647962	0.81[EUR][1000 genomes]
rs56096438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56743579	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56847789	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56999910	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57116567	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57217108	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57421283	1.00[AMR][1000 genomes]
rs57607342	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57962992	0.82[EUR][1000 genomes]
rs58032842	1.00[AMR][1000 genomes]
rs58124219	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58269367	1.00[AMR][1000 genomes]
rs58474842	0.86[AMR][1000 genomes]
rs58576901	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58735749	1.00[AMR][1000 genomes]
rs58751410	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59034165	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59214037	1.00[AMR][1000 genomes]
rs59495279	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59875769	1.00[AMR][1000 genomes]
rs59964119	1.00[AMR][1000 genomes]
rs60074363	1.00[AMR][1000 genomes]
rs60285195	1.00[AMR][1000 genomes]
rs60746078	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60994855	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61047847	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61379368	0.86[AMR][1000 genomes]
rs73483720	1.00[AMR][1000 genomes]
rs73483728	1.00[AMR][1000 genomes]
rs73483743	1.00[AMR][1000 genomes]
rs73483749	0.86[AMR][1000 genomes]
rs73483752	1.00[AMR][1000 genomes]
rs73483758	1.00[AMR][1000 genomes]
rs73483760	1.00[AMR][1000 genomes]
rs73483765	1.00[AMR][1000 genomes]
rs73483769	1.00[AMR][1000 genomes]
rs73483771	0.93[AMR][1000 genomes]
rs73483774	1.00[AMR][1000 genomes]
rs73483790	1.00[AMR][1000 genomes]
rs73483796	1.00[AMR][1000 genomes]
rs73483799	0.85[AMR][1000 genomes]
rs73485808	0.85[AMR][1000 genomes]
rs73499768	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73499770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73499771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73499800	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73499802	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501611	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73501620	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501623	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501629	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501632	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501636	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501638	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501641	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501658	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501662	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73751992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87803600-87816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:87813800-87815400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:87814200-87816600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr6:87814400-87815800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:87814600-87816200	Enhancers	Muscle Satellite Cultured Cells	--

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