Variant report

Variant	rs73483774
Chromosome Location	chr6:87917987-87917988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87864743..87869540-chr6:87917835..87921534,5	MCF-7	breast:
2	chr6:87912583..87915410-chr6:87916738..87919725,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272008	Chromatin interaction
ENSG00000188994	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10488045	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10498960	0.94[EUR][1000 genomes]
rs16878473	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16878570	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878622	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878713	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878729	0.97[EUR][1000 genomes]
rs16878734	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16878736	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16878809	0.88[EUR][1000 genomes]
rs16878856	0.94[EUR][1000 genomes]
rs16878863	0.94[EUR][1000 genomes]
rs16878942	0.94[EUR][1000 genomes]
rs1925693	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273281	0.94[EUR][1000 genomes]
rs41273283	0.94[EUR][1000 genomes]
rs55647962	0.91[EUR][1000 genomes]
rs56096438	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56193950	0.94[EUR][1000 genomes]
rs56678817	0.94[EUR][1000 genomes]
rs56743579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56847789	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56947685	1.00[AMR][1000 genomes]
rs56999910	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57043501	0.94[EUR][1000 genomes]
rs57116567	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57217108	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57421283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57607342	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57962992	0.91[EUR][1000 genomes]
rs58032842	1.00[AMR][1000 genomes]
rs58124219	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58269367	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58327183	0.94[EUR][1000 genomes]
rs58474842	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58576901	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58731649	0.94[EUR][1000 genomes]
rs58735749	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58751410	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59034165	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59138817	0.94[EUR][1000 genomes]
rs59150116	0.94[EUR][1000 genomes]
rs59214037	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59344869	0.91[AFR][1000 genomes]
rs59495279	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59654654	0.94[EUR][1000 genomes]
rs59875769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59964119	1.00[AMR][1000 genomes]
rs60074363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60285195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60544317	0.91[EUR][1000 genomes]
rs60746078	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60845773	0.94[EUR][1000 genomes]
rs60985818	0.87[EUR][1000 genomes]
rs60994855	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61047847	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61379368	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61705669	0.94[EUR][1000 genomes]
rs73483720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483728	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483749	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483765	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483771	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73483790	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483799	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485808	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73485811	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73485813	1.00[EUR][1000 genomes]
rs73485815	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73485820	0.94[EUR][1000 genomes]
rs73485826	0.94[EUR][1000 genomes]
rs73485828	0.94[EUR][1000 genomes]
rs73485831	0.94[EUR][1000 genomes]
rs73485848	0.94[EUR][1000 genomes]
rs73485849	0.94[EUR][1000 genomes]
rs73499768	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73499770	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73499771	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73499800	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73499802	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501611	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73501620	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501623	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501629	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501632	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501636	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501638	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501641	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501658	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73751992	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87868000-87933000	Weak transcription	Hela-S3	cervix
2	chr6:87874400-87924200	Weak transcription	Fetal Kidney	kidney
3	chr6:87879800-87923000	Weak transcription	Esophagus	oesophagus
4	chr6:87881400-87926200	Weak transcription	Liver	Liver
5	chr6:87883400-87926200	Weak transcription	Fetal Lung	lung
6	chr6:87884000-87964400	Weak transcription	NHEK	skin
7	chr6:87888200-87964200	Weak transcription	HSMMtube	muscle
8	chr6:87889800-87926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:87890800-87933000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:87891000-87920000	Weak transcription	Placenta	Placenta
11	chr6:87891000-87956000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:87891200-87929200	Weak transcription	Thymus	Thymus
13	chr6:87891400-87932600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:87892000-87923000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:87892800-87921600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:87894800-87921800	Weak transcription	NHDF-Ad	bronchial
17	chr6:87894800-87924200	Weak transcription	Adipose Nuclei	Adipose
18	chr6:87894800-87926200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:87895800-87924000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:87896000-87932800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:87896200-87920200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:87896200-87921400	Weak transcription	HepG2	liver
23	chr6:87896400-87925600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:87896400-87926000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:87896400-87927400	Weak transcription	HMEC	breast
26	chr6:87896400-87927800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:87896600-87923200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:87896600-87925600	Weak transcription	HSMM	muscle
29	chr6:87905200-87950200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:87906200-87921800	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:87906200-87956200	Weak transcription	A549	lung
32	chr6:87906400-87919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr6:87906400-87920200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:87906400-87964400	Weak transcription	NHLF	lung
35	chr6:87907400-87930800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:87907800-87929200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:87908800-87918800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:87909000-87928400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:87909000-87929800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:87909800-87918600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:87909800-87918600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:87909800-87918600	Weak transcription	Small Intestine	intestine
43	chr6:87909800-87921600	Weak transcription	Gastric	stomach
44	chr6:87910200-87934400	Weak transcription	Fetal Brain Male	brain
45	chr6:87910400-87921800	Weak transcription	Brain Substantia Nigra	brain
46	chr6:87910400-87922000	Weak transcription	Brain Angular Gyrus	brain
47	chr6:87910400-87922400	Weak transcription	Brain Germinal Matrix	brain
48	chr6:87910400-87922600	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:87910400-87923200	Weak transcription	Fetal Brain Female	brain
50	chr6:87910600-87922200	Weak transcription	Brain Anterior Caudate	brain

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