Variant report

Variant	rs60746078
Chromosome Location	chr6:87828967-87828968
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10488045	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16878473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878570	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16878622	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16878638	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16878712	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16878713	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16878734	0.82[EUR][1000 genomes]
rs16878736	0.82[EUR][1000 genomes]
rs1925693	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55647962	0.85[EUR][1000 genomes]
rs56096438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56743579	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56847789	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56947685	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56999910	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57116567	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57217108	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57421283	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57607342	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57962992	0.85[EUR][1000 genomes]
rs58032842	1.00[AMR][1000 genomes]
rs58124219	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58269367	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58474842	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58576901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58735749	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58751410	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59034165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59214037	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59495279	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59875769	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59964119	1.00[AMR][1000 genomes]
rs60074363	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60285195	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60985818	0.81[EUR][1000 genomes]
rs60994855	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61047847	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61379368	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483720	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483728	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483743	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483749	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483752	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483758	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483760	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483765	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483769	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483771	0.93[AMR][1000 genomes]
rs73483774	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483790	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483796	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73483799	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73485808	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73485811	0.82[EUR][1000 genomes]
rs73485813	0.82[EUR][1000 genomes]
rs73485815	0.82[EUR][1000 genomes]
rs73499768	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73499770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73499771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73499800	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73499802	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501611	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73501620	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501623	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501629	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501632	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501636	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501638	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501641	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501658	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73501662	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73751992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87827400-87830000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:87828200-87830000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links