Variant report

Variant	rs73483749
Chromosome Location	chr6:87909656-87909657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87908403..87910997-chr6:87922375..87924622,2	K562	blood:

Variant related genes	Relation type
ENSG00000188994	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10488045	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10498960	0.94[EUR][1000 genomes]
rs16878473	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16878570	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878622	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878638	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16878712	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878713	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878729	0.97[EUR][1000 genomes]
rs16878734	1.00[EUR][1000 genomes]
rs16878736	1.00[EUR][1000 genomes]
rs16878809	0.88[EUR][1000 genomes]
rs16878856	0.94[EUR][1000 genomes]
rs16878863	0.94[EUR][1000 genomes]
rs16878942	0.94[EUR][1000 genomes]
rs1925693	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273281	0.94[EUR][1000 genomes]
rs41273283	0.94[EUR][1000 genomes]
rs55647962	0.91[EUR][1000 genomes]
rs56096438	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56193950	0.94[EUR][1000 genomes]
rs56678817	0.94[EUR][1000 genomes]
rs56743579	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56847789	0.91[EUR][1000 genomes]
rs56947685	0.86[AMR][1000 genomes]
rs56999910	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57043501	0.94[EUR][1000 genomes]
rs57116567	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57217108	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57421283	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57607342	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57962992	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58032842	0.86[AMR][1000 genomes]
rs58124219	0.82[EUR][1000 genomes]
rs58269367	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58327183	0.94[EUR][1000 genomes]
rs58474842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58576901	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58731649	0.94[EUR][1000 genomes]
rs58735749	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58751410	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59034165	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59138817	0.94[EUR][1000 genomes]
rs59150116	0.94[EUR][1000 genomes]
rs59214037	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59495279	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59654654	0.94[EUR][1000 genomes]
rs59875769	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59964119	0.86[AMR][1000 genomes]
rs60074363	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60285195	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60544317	0.91[EUR][1000 genomes]
rs60746078	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60845773	0.94[EUR][1000 genomes]
rs60985818	0.87[EUR][1000 genomes]
rs60994855	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61047847	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61379368	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61705669	0.94[EUR][1000 genomes]
rs73483720	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483728	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483743	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483752	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483758	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483760	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483765	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483769	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483771	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73483774	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483790	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483796	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73483799	1.00[EUR][1000 genomes]
rs73485808	1.00[EUR][1000 genomes]
rs73485811	1.00[EUR][1000 genomes]
rs73485813	1.00[EUR][1000 genomes]
rs73485815	1.00[EUR][1000 genomes]
rs73485820	0.94[EUR][1000 genomes]
rs73485826	0.94[EUR][1000 genomes]
rs73485828	0.94[EUR][1000 genomes]
rs73485831	0.94[EUR][1000 genomes]
rs73485848	0.94[EUR][1000 genomes]
rs73485849	0.94[EUR][1000 genomes]
rs73499768	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73499770	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73499771	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73499800	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73499802	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501611	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73501620	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501623	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501629	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501632	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501636	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501641	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501658	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73501662	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73751992	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87867000-87915600	Weak transcription	NH-A	brain
2	chr6:87868000-87933000	Weak transcription	Hela-S3	cervix
3	chr6:87874400-87924200	Weak transcription	Fetal Kidney	kidney
4	chr6:87875000-87910400	Weak transcription	K562	blood
5	chr6:87879800-87923000	Weak transcription	Esophagus	oesophagus
6	chr6:87881400-87926200	Weak transcription	Liver	Liver
7	chr6:87883400-87926200	Weak transcription	Fetal Lung	lung
8	chr6:87884000-87964400	Weak transcription	NHEK	skin
9	chr6:87888200-87964200	Weak transcription	HSMMtube	muscle
10	chr6:87889800-87926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:87890800-87910000	Weak transcription	Right Ventricle	heart
12	chr6:87890800-87933000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:87891000-87920000	Weak transcription	Placenta	Placenta
14	chr6:87891000-87956000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:87891200-87913000	Weak transcription	Lung	lung
16	chr6:87891200-87929200	Weak transcription	Thymus	Thymus
17	chr6:87891400-87912800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:87891400-87932600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:87892000-87923000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:87892800-87921600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:87893000-87917600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:87893800-87915600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:87894000-87915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:87894800-87921800	Weak transcription	NHDF-Ad	bronchial
25	chr6:87894800-87924200	Weak transcription	Adipose Nuclei	Adipose
26	chr6:87894800-87926200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:87895800-87912600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:87895800-87924000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:87896000-87932800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:87896200-87920200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:87896200-87921400	Weak transcription	HepG2	liver
32	chr6:87896400-87910400	Weak transcription	Osteobl	bone
33	chr6:87896400-87911800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:87896400-87913000	Weak transcription	Fetal Intestine Large	intestine
35	chr6:87896400-87915600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:87896400-87925600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:87896400-87926000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:87896400-87927400	Weak transcription	HMEC	breast
39	chr6:87896400-87927800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:87896600-87910200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:87896600-87911400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:87896600-87912800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:87896600-87913000	Weak transcription	Fetal Stomach	stomach
44	chr6:87896600-87913200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:87896600-87913200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:87896600-87913200	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:87896600-87915000	Weak transcription	Fetal Thymus	thymus
48	chr6:87896600-87915600	Weak transcription	Primary B cells from cord blood	blood
49	chr6:87896600-87923200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:87896600-87925600	Weak transcription	HSMM	muscle

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