Variant report

Variant	rs59597706
Chromosome Location	chr6:88048834-88048835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88044455..88046283-chr6:88047721..88049403,2	K562	blood:
2	chr6:88048113..88050029-chr6:88072806..88075725,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10498960	0.95[AFR][1000 genomes]
rs1359982	1.00[EUR][1000 genomes]
rs16878809	0.82[AFR][1000 genomes]
rs16878856	0.89[AFR][1000 genomes]
rs16878863	0.89[AFR][1000 genomes]
rs16878942	0.95[AFR][1000 genomes]
rs16878991	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16878999	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879012	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41273281	0.89[AFR][1000 genomes]
rs41273283	0.89[AFR][1000 genomes]
rs45620640	0.90[EUR][1000 genomes]
rs56010354	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56193950	0.87[AFR][1000 genomes]
rs56305030	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56957450	0.90[EUR][1000 genomes]
rs57043501	0.95[AFR][1000 genomes]
rs57552196	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57596999	1.00[EUR][1000 genomes]
rs57631457	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58321177	1.00[EUR][1000 genomes]
rs58327183	0.83[AFR][1000 genomes]
rs58646133	1.00[EUR][1000 genomes]
rs58731649	0.95[AFR][1000 genomes]
rs59127357	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59150116	0.86[AFR][1000 genomes]
rs60544317	0.89[AFR][1000 genomes]
rs60628059	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60845773	0.86[AFR][1000 genomes]
rs61174011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61705669	0.86[AFR][1000 genomes]
rs73485820	0.86[AFR][1000 genomes]
rs73485826	0.85[AFR][1000 genomes]
rs73485828	0.83[AFR][1000 genomes]
rs73485831	0.83[AFR][1000 genomes]
rs73488008	0.85[EUR][1000 genomes]
rs73488017	1.00[EUR][1000 genomes]
rs73488048	0.90[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88033000-88049000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:88033200-88056400	Weak transcription	Liver	Liver
4	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:88039000-88051400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:88039000-88068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:88039000-88078400	Weak transcription	Fetal Stomach	stomach
8	chr6:88039400-88061200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:88039800-88051000	Weak transcription	GM12878-XiMat	blood
10	chr6:88040200-88075800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:88040600-88116800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:88040800-88052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:88043600-88058400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:88043800-88056400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:88043800-88056800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:88043800-88061400	Weak transcription	Gastric	stomach
17	chr6:88043800-88068400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:88044000-88052400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:88044000-88052600	Weak transcription	Thymus	Thymus
20	chr6:88044000-88053600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:88044000-88054000	Weak transcription	Dnd41	blood
22	chr6:88044000-88054200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:88044000-88056000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:88044000-88071400	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:88044200-88051400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:88044400-88049000	Weak transcription	Lung	lung
27	chr6:88044400-88049800	Weak transcription	Fetal Intestine Small	intestine
28	chr6:88044400-88051000	Weak transcription	Pancreas	Pancrea
29	chr6:88044400-88053000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:88044400-88056000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:88044400-88056800	Weak transcription	Fetal Thymus	thymus
32	chr6:88044400-88076000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:88044800-88053800	Weak transcription	Psoas Muscle	Psoas
34	chr6:88044800-88072600	Weak transcription	Adipose Nuclei	Adipose
35	chr6:88044800-88075600	Weak transcription	Fetal Lung	lung
36	chr6:88045000-88054000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:88045000-88054600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:88045000-88059800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:88045400-88053400	Weak transcription	Primary T cells from cord blood	blood
40	chr6:88046200-88055800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:88046400-88050400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr6:88046400-88053400	Weak transcription	Primary B cells from cord blood	blood
43	chr6:88046400-88054400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr6:88046600-88049400	Weak transcription	K562	blood
45	chr6:88046600-88051600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:88046600-88055600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:88047200-88056600	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:88048000-88049200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:88048000-88050200	Enhancers	Fetal Heart	heart
50	chr6:88048200-88059000	Weak transcription	Fetal Brain Female	brain

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