Variant report

Variant	rs57631457
Chromosome Location	chr6:88038228-88038229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88030655..88033234-chr6:88038071..88039593,2	MCF-7	breast:
2	chr6:88031398..88035229-chr6:88037396..88042297,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164411	Chromatin interaction
ENSG00000226524	Chromatin interaction
ENSG00000111850	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10498960	0.86[AFR][1000 genomes]
rs1359982	0.95[EUR][1000 genomes]
rs16878856	0.81[AFR][1000 genomes]
rs16878863	0.81[AFR][1000 genomes]
rs16878942	0.86[AFR][1000 genomes]
rs16878991	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16878999	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16879012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41273281	0.81[AFR][1000 genomes]
rs41273283	0.81[AFR][1000 genomes]
rs45620640	0.86[EUR][1000 genomes]
rs56010354	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56305030	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56957450	0.86[EUR][1000 genomes]
rs57043501	0.86[AFR][1000 genomes]
rs57552196	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs57596999	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58321177	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58646133	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58731649	0.86[AFR][1000 genomes]
rs59127357	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59597706	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs60544317	0.81[AFR][1000 genomes]
rs60628059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61174011	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73488008	0.81[EUR][1000 genomes]
rs73488017	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73488048	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823771	chr6:88032762-88039447	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88033000-88039600	Weak transcription	GM12878-XiMat	blood
2	chr6:88033000-88043600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:88033000-88043600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:88033000-88043600	Weak transcription	Spleen	Spleen
5	chr6:88033000-88049000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:88033000-88055200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:88033200-88042800	Weak transcription	Fetal Thymus	thymus
8	chr6:88033200-88043000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:88033200-88043400	Weak transcription	Primary T cells from cord blood	blood
10	chr6:88033200-88043600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:88033200-88043600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:88033200-88043600	Weak transcription	Pancreas	Pancrea
13	chr6:88033200-88045200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:88033200-88045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:88033200-88048000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:88033200-88056400	Weak transcription	Liver	Liver
17	chr6:88033200-88062200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:88035800-88043400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:88038000-88039000	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr6:88038000-88039600	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:88038200-88038400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:88038200-88038600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:88038200-88038600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:88038200-88039000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:88038200-88039000	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr6:88038200-88039200	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr6:88038200-88039400	Active TSS	iPS-15b Cell Line	embryonic stem cell

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