Variant report

Variant	rs56964434
Chromosome Location	chr1:186049374-186049375
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186024136..186026677-chr1:186048146..186050560,2	K562	blood:
2	chr1:186039815..186041891-chr1:186047114..186049394,2	MCF-7	breast:
3	chr1:186047845..186049975-chr1:186050625..186052952,2	MCF-7	breast:
4	chr1:186043940..186045863-chr1:186047900..186050719,2	MCF-7	breast:
5	chr1:186048997..186051706-chr1:186197290..186199226,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11803015	0.90[AFR][1000 genomes]
rs11808513	0.89[AFR][1000 genomes]
rs12736863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1884663	0.82[AFR][1000 genomes]
rs4548394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55768766	0.90[AFR][1000 genomes]
rs55955873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58293393	0.82[AFR][1000 genomes]
rs59391265	0.85[AMR][1000 genomes]
rs61218817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61629925	0.82[AFR][1000 genomes]
rs74134269	0.82[AFR][1000 genomes]
rs74134273	0.82[AFR][1000 genomes]
rs74134276	0.82[AFR][1000 genomes]
rs74134278	0.82[AFR][1000 genomes]
rs74134284	0.90[AFR][1000 genomes]
rs74134286	0.88[AFR][1000 genomes]
rs74134287	0.90[AFR][1000 genomes]
rs74134288	0.88[AFR][1000 genomes]
rs74134291	0.90[AFR][1000 genomes]
rs74134293	0.88[AFR][1000 genomes]
rs74134296	0.88[AFR][1000 genomes]
rs74136019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136020	0.85[AMR][1000 genomes]
rs74136022	0.85[AMR][1000 genomes]
rs74136029	0.85[AMR][1000 genomes]
rs74136032	0.85[AMR][1000 genomes]
rs74136040	0.85[AMR][1000 genomes]
rs74136044	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:186013600-186068400	Weak transcription	Fetal Kidney	kidney
3	chr1:186020000-186062600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:186024800-186051400	Weak transcription	Left Ventricle	heart
5	chr1:186037800-186051200	Weak transcription	Liver	Liver
6	chr1:186039600-186053800	Weak transcription	Adipose Nuclei	Adipose
7	chr1:186040200-186064400	Weak transcription	Lung	lung
8	chr1:186045800-186051000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:186047600-186050200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:186047800-186050000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:186047800-186050200	Weak transcription	K562	blood
13	chr1:186047800-186057200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:186048000-186051200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:186048200-186050600	Weak transcription	NHDF-Ad	bronchial
16	chr1:186048400-186051400	Weak transcription	GM12878-XiMat	blood
17	chr1:186048400-186062400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:186048600-186050800	Weak transcription	Fetal Stomach	stomach
19	chr1:186048600-186051400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:186048800-186051000	Weak transcription	Hela-S3	cervix
21	chr1:186048800-186051400	Weak transcription	Fetal Lung	lung
22	chr1:186049200-186050200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:186049200-186051000	Weak transcription	NHEK	skin
24	chr1:186049200-186051400	Weak transcription	Aorta	Aorta
25	chr1:186049200-186051400	Weak transcription	Esophagus	oesophagus
26	chr1:186049200-186059600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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