Variant report

Variant	rs61218817
Chromosome Location	chr1:186045037-186045038
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11803015	0.90[AFR][1000 genomes]
rs11808513	0.89[AFR][1000 genomes]
rs12736863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1884663	0.82[AFR][1000 genomes]
rs4548394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55768766	0.90[AFR][1000 genomes]
rs55955873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56964434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58293393	0.82[AFR][1000 genomes]
rs59391265	0.85[AMR][1000 genomes]
rs61629925	0.82[AFR][1000 genomes]
rs74134269	0.82[AFR][1000 genomes]
rs74134273	0.82[AFR][1000 genomes]
rs74134276	0.82[AFR][1000 genomes]
rs74134278	0.82[AFR][1000 genomes]
rs74134284	0.90[AFR][1000 genomes]
rs74134286	0.88[AFR][1000 genomes]
rs74134287	0.90[AFR][1000 genomes]
rs74134288	0.88[AFR][1000 genomes]
rs74134291	0.90[AFR][1000 genomes]
rs74134293	0.88[AFR][1000 genomes]
rs74134296	0.88[AFR][1000 genomes]
rs74136019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136020	0.85[AMR][1000 genomes]
rs74136022	0.85[AMR][1000 genomes]
rs74136029	0.85[AMR][1000 genomes]
rs74136032	0.85[AMR][1000 genomes]
rs74136040	0.85[AMR][1000 genomes]
rs74136044	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186007400-186048000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:186012000-186048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:186013600-186068400	Weak transcription	Fetal Kidney	kidney
5	chr1:186020000-186062600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:186024800-186051400	Weak transcription	Left Ventricle	heart
7	chr1:186037800-186051200	Weak transcription	Liver	Liver
8	chr1:186039600-186053800	Weak transcription	Adipose Nuclei	Adipose
9	chr1:186039800-186047000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:186040200-186064400	Weak transcription	Lung	lung
11	chr1:186040800-186048000	Weak transcription	Fetal Lung	lung
12	chr1:186042200-186045200	Weak transcription	Aorta	Aorta
13	chr1:186044200-186045600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:186045000-186045600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr1:186045000-186045800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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