Variant report

Variant	rs74136032
Chromosome Location	chr1:186085758-186085759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:186078739..186082381-chr1:186083943..186086893,3	K562	blood:
2	chr1:186084568..186087307-chr1:186119839..186122965,3	MCF-7	breast:
3	chr1:186080718..186085841-chr1:186086929..186090356,5	MCF-7	breast:
4	chr1:186076988..186079778-chr1:186084183..186085799,2	K562	blood:
5	chr1:186084949..186088330-chr1:186095742..186098287,3	MCF-7	breast:
6	chr1:186059367..186062691-chr1:186084614..186088855,3	K562	blood:
7	chr1:186084110..186085893-chr1:186120570..186122700,2	MCF-7	breast:
8	chr1:186084205..186086520-chr1:186088777..186090630,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000143341	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12736863	0.85[AMR][1000 genomes]
rs4548394	0.85[AMR][1000 genomes]
rs55955873	0.85[AMR][1000 genomes]
rs56964434	0.85[AMR][1000 genomes]
rs57311690	0.83[AMR][1000 genomes]
rs59391265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61218817	0.85[AMR][1000 genomes]
rs74136019	0.85[AMR][1000 genomes]
rs74136020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136042	0.83[AMR][1000 genomes]
rs74136044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136049	0.83[AMR][1000 genomes]
rs74136050	0.83[AMR][1000 genomes]
rs74136052	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:186052200-186118200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:186064000-186094200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:186064600-186092000	Weak transcription	Left Ventricle	heart
5	chr1:186064600-186113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:186065200-186093800	Weak transcription	Spleen	Spleen
7	chr1:186072200-186091000	Weak transcription	NHDF-Ad	bronchial
8	chr1:186072600-186108400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:186072800-186107800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:186073000-186121400	Weak transcription	NH-A	brain
11	chr1:186075000-186113600	Weak transcription	Lung	lung
12	chr1:186076400-186106800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:186076800-186097200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:186079000-186108000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:186079200-186092000	Weak transcription	Liver	Liver
16	chr1:186079800-186087800	Weak transcription	Fetal Lung	lung
17	chr1:186080400-186121400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:186082000-186090200	Weak transcription	Aorta	Aorta
19	chr1:186082400-186090800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:186082800-186093800	Weak transcription	Ovary	ovary
21	chr1:186084200-186092000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:186084400-186106600	Weak transcription	Adipose Nuclei	Adipose
23	chr1:186085600-186086400	Enhancers	K562	blood

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