Variant report

Variant	rs74136020
Chromosome Location	chr1:186054571-186054572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186052484..186056029-chr1:186058182..186062162,4	MCF-7	breast:
2	chr1:186054319..186058935-chr1:186059910..186064070,10	K562	blood:
3	chr1:186054319..186058815-chr1:186059370..186064070,6	K562	blood:
4	chr1:186053689..186055755-chr1:186056570..186059211,2	K562	blood:
5	chr1:186052077..186054577-chr1:186279417..186281878,2	K562	blood:

Variant related genes	Relation type
ENSG00000202025	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12736863	0.85[AMR][1000 genomes]
rs4548394	0.85[AMR][1000 genomes]
rs55955873	0.85[AMR][1000 genomes]
rs56964434	0.85[AMR][1000 genomes]
rs57311690	0.83[AMR][1000 genomes]
rs59391265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61218817	0.85[AMR][1000 genomes]
rs74136019	0.85[AMR][1000 genomes]
rs74136022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136042	0.83[AMR][1000 genomes]
rs74136044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74136049	0.83[AMR][1000 genomes]
rs74136050	0.83[AMR][1000 genomes]
rs74136052	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:186013600-186068400	Weak transcription	Fetal Kidney	kidney
3	chr1:186020000-186062600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:186040200-186064400	Weak transcription	Lung	lung
5	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:186047800-186057200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:186048400-186062400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:186049200-186059600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:186050400-186062600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:186050600-186064400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:186051400-186063200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:186051600-186056800	Weak transcription	Liver	Liver
13	chr1:186051600-186064400	Weak transcription	Left Ventricle	heart
14	chr1:186051800-186061000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:186051800-186062200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:186051800-186062400	Weak transcription	Fetal Lung	lung
17	chr1:186051800-186062600	Weak transcription	NHDF-Ad	bronchial
18	chr1:186051800-186062800	Weak transcription	NH-A	brain
19	chr1:186052200-186055600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:186052200-186118200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:186054000-186054800	Strong transcription	Aorta	Aorta
22	chr1:186054400-186054600	ZNF genes & repeats	Esophagus	oesophagus
23	chr1:186054400-186054600	Enhancers	K562	blood
24	chr1:186054400-186056600	Weak transcription	Adipose Nuclei	Adipose

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