Variant report

Variant	rs56982325
Chromosome Location	chr4:54570765-54570766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54570474..54572484-chr4:54573853..54575756,2	K562	blood:
2	chr4:54568125..54570977-chr4:54571339..54573651,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17083362	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3762880	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3915416	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60077509	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554124	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6811080	0.85[AMR][1000 genomes]
rs714146	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73817047	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73817048	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7686371	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7699271	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7699804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569200-54573200	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:54569400-54571400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:54569400-54572400	Weak transcription	Psoas Muscle	Psoas
4	chr4:54569400-54572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:54569400-54573200	Enhancers	Primary B cells from cord blood	blood
6	chr4:54569400-54577200	Weak transcription	Aorta	Aorta
7	chr4:54569600-54570800	Enhancers	GM12878-XiMat	blood
8	chr4:54569600-54570800	Enhancers	NHDF-Ad	bronchial
9	chr4:54569600-54572000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:54569600-54572800	Weak transcription	Gastric	stomach
11	chr4:54569600-54572800	Weak transcription	Pancreas	Pancrea
12	chr4:54569600-54573200	Weak transcription	Colonic Mucosa	Colon
13	chr4:54569600-54580200	Weak transcription	HSMM	muscle
14	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:54569800-54570800	Weak transcription	Lung	lung
16	chr4:54569800-54571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:54569800-54571200	Weak transcription	Small Intestine	intestine
18	chr4:54569800-54571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:54569800-54571600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:54569800-54572000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:54569800-54572800	Weak transcription	Ovary	ovary
22	chr4:54569800-54572800	Weak transcription	Spleen	Spleen
23	chr4:54569800-54577800	Weak transcription	Right Atrium	heart
24	chr4:54569800-54578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:54570000-54571200	Weak transcription	A549	lung
26	chr4:54570000-54571200	Weak transcription	NH-A	brain
27	chr4:54570000-54571400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr4:54570000-54571400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:54570000-54571400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:54570000-54572200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:54570000-54572400	Weak transcription	Liver	Liver
32	chr4:54570200-54571200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:54570200-54571200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:54570200-54571200	Weak transcription	HUVEC	blood vessel
35	chr4:54570200-54571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:54570200-54571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:54570200-54571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:54570200-54571400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:54570200-54571400	Weak transcription	NHLF	lung
40	chr4:54570200-54571400	Weak transcription	Osteobl	bone
41	chr4:54570200-54572000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:54570200-54572400	Weak transcription	Fetal Heart	heart
43	chr4:54570200-54577800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:54570400-54571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:54570400-54571600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:54570400-54572000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:54570400-54572600	Weak transcription	Adipose Nuclei	Adipose
48	chr4:54570400-54572800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr4:54570600-54571600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr4:54570600-54572600	Weak transcription	Fetal Kidney	kidney

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