Variant report

Variant	rs7699271
Chromosome Location	chr4:54578398-54578399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17083362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2590784	0.81[ASN][1000 genomes]
rs3762880	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3915416	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56982325	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60077509	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6554124	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6811080	0.85[AMR][1000 genomes]
rs714146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73817047	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73817048	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7686371	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7699804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569600-54580200	Weak transcription	HSMM	muscle
2	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:54569800-54578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:54572800-54578600	Weak transcription	Adipose Nuclei	Adipose
5	chr4:54573200-54580200	Weak transcription	NHLF	lung
6	chr4:54573200-54581400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:54577400-54581200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:54577400-54581400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:54577600-54579000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:54577600-54579200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:54577600-54579200	Enhancers	Ovary	ovary
12	chr4:54577600-54584000	Enhancers	Osteobl	bone
13	chr4:54577800-54578800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:54577800-54578800	Enhancers	Fetal Muscle Trunk	muscle
15	chr4:54577800-54578800	Enhancers	Pancreas	Pancrea
16	chr4:54577800-54578800	Enhancers	Right Atrium	heart
17	chr4:54577800-54579800	Enhancers	Fetal Muscle Leg	muscle
18	chr4:54577800-54581400	Enhancers	NHDF-Ad	bronchial
19	chr4:54577800-54583600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:54578000-54578400	Enhancers	Fetal Stomach	stomach
21	chr4:54578000-54578600	Weak transcription	Aorta	Aorta
22	chr4:54578000-54578800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:54578000-54578800	Enhancers	Placenta	Placenta
24	chr4:54578200-54579000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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