Variant report

Variant	rs73817047
Chromosome Location	chr4:54601154-54601155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17083362	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3762880	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3762882	0.81[EUR][1000 genomes]
rs3915416	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3947804	0.80[ASN][1000 genomes]
rs56982325	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60077509	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6554124	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6811080	0.82[AMR][1000 genomes]
rs714146	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73817048	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7686371	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7699271	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7699804	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15357	chr4:54591392-54603209	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54598400-54602600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:54600000-54601400	Enhancers	Colon Smooth Muscle	Colon
3	chr4:54600000-54603400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54600200-54602400	Enhancers	HSMM	muscle
5	chr4:54600600-54601200	Flanking Active TSS	NHDF-Ad	bronchial
6	chr4:54600600-54601200	Flanking Active TSS	NHLF	lung
7	chr4:54600600-54601200	Flanking Active TSS	Osteobl	bone
8	chr4:54600600-54601400	Flanking Active TSS	NH-A	brain
9	chr4:54600600-54601800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:54600600-54601800	Enhancers	HMEC	breast
11	chr4:54600600-54601800	Enhancers	NHEK	skin
12	chr4:54600800-54601200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:54600800-54601200	Flanking Active TSS	HUVEC	blood vessel
14	chr4:54600800-54601400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:54600800-54601800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr4:54601000-54601200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:54601000-54601200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:54601000-54601800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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