Variant report

Variant	rs6811080
Chromosome Location	chr4:54571234-54571235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr4:54571098-54572151	GM19099	blood:	n/a	n/a
2	SPI1	chr4:54571088-54571979	GM12878	blood:	n/a	n/a
3	RELA	chr4:54570983-54572148	GM12891	blood:	n/a	n/a
4	ATF2	chr4:54571152-54571797	GM12878	blood:	n/a	n/a
5	RELA	chr4:54571028-54572161	GM18951	blood:	n/a	n/a
6	IKZF1	chr4:54571181-54572140	GM12878	blood:	n/a	n/a
7	RUNX3	chr4:54571214-54571914	GM12878	blood:	n/a	n/a
8	MTA3	chr4:54571168-54572102	GM12878	blood:	n/a	n/a
9	RELA	chr4:54571061-54572091	GM12878	blood:	n/a	n/a
10	PAX5	chr4:54571192-54571674	GM12878	blood:	n/a	n/a
11	EBF1	chr4:54570965-54571845	GM12878	blood:	n/a	n/a
12	NFIC	chr4:54570856-54571953	GM12878	blood:	n/a	n/a
13	RELA	chr4:54571181-54571827	GM10847	blood:	n/a	n/a
14	RELA	chr4:54571217-54572085	GM18505	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54570474..54572484-chr4:54573853..54575756,2	K562	blood:

Variant related genes	Relation type
LNX1	TF binding region

rs_ID	r²[population]
rs12504598	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17083362	0.85[AMR][1000 genomes]
rs3915416	0.85[AMR][1000 genomes]
rs56982325	0.85[AMR][1000 genomes]
rs57066736	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6554124	0.85[AMR][1000 genomes]
rs714146	0.85[AMR][1000 genomes]
rs73817045	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73817047	0.82[AMR][1000 genomes]
rs73817048	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7699271	0.85[AMR][1000 genomes]
rs7699804	0.85[AMR][1000 genomes]

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569200-54573200	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:54569400-54571400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:54569400-54572400	Weak transcription	Psoas Muscle	Psoas
4	chr4:54569400-54572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:54569400-54573200	Enhancers	Primary B cells from cord blood	blood
6	chr4:54569400-54577200	Weak transcription	Aorta	Aorta
7	chr4:54569600-54572000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:54569600-54572800	Weak transcription	Gastric	stomach
9	chr4:54569600-54572800	Weak transcription	Pancreas	Pancrea
10	chr4:54569600-54573200	Weak transcription	Colonic Mucosa	Colon
11	chr4:54569600-54580200	Weak transcription	HSMM	muscle
12	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:54569800-54571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:54569800-54571600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:54569800-54572000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:54569800-54572800	Weak transcription	Ovary	ovary
17	chr4:54569800-54572800	Weak transcription	Spleen	Spleen
18	chr4:54569800-54577800	Weak transcription	Right Atrium	heart
19	chr4:54569800-54578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:54570000-54571400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:54570000-54571400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:54570000-54571400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:54570000-54572200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:54570000-54572400	Weak transcription	Liver	Liver
25	chr4:54570200-54571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:54570200-54571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:54570200-54571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:54570200-54571400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:54570200-54571400	Weak transcription	NHLF	lung
30	chr4:54570200-54571400	Weak transcription	Osteobl	bone
31	chr4:54570200-54572000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:54570200-54572400	Weak transcription	Fetal Heart	heart
33	chr4:54570200-54577800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:54570400-54571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:54570400-54571600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:54570400-54572000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:54570400-54572600	Weak transcription	Adipose Nuclei	Adipose
38	chr4:54570400-54572800	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:54570600-54571600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr4:54570600-54572600	Weak transcription	Fetal Kidney	kidney
41	chr4:54570800-54572200	Enhancers	Lung	lung
42	chr4:54570800-54572600	Flanking Active TSS	GM12878-XiMat	blood
43	chr4:54571000-54573200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:54571200-54571600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr4:54571200-54571800	Enhancers	NH-A	brain
46	chr4:54571200-54572200	Enhancers	HUVEC	blood vessel
47	chr4:54571200-54572400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:54571200-54572600	Enhancers	A549	lung
49	chr4:54571200-54573200	Enhancers	NHDF-Ad	bronchial

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