Variant report

Variant	rs57003068
Chromosome Location	chr13:97892560-97892561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:97889990..97892633-chr13:97895348..97898015,2	MCF-7	breast:
2	chr13:97892207..97896967-chr13:97905810..97911512,6	K562	blood:
3	chr13:97890017..97893830-chr13:97894235..97897947,5	K562	blood:
4	chr13:97892207..97897500-chr13:97905924..97911512,9	K562	blood:
5	chr13:97881905..97884779-chr13:97891796..97893713,2	MCF-7	breast:
6	chr13:97883639..97888223-chr13:97888845..97894728,6	K562	blood:
7	chr13:97891761..97895595-chr13:97895855..97899530,6	K562	blood:
8	chr13:97885101..97888223-chr13:97890978..97895082,5	K562	blood:
9	chr13:97880037..97884832-chr13:97887961..97893299,6	MCF-7	breast:

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55677292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55678844	1.00[AMR][1000 genomes]
rs57797978	1.00[AMR][1000 genomes]
rs58889097	1.00[AMR][1000 genomes]
rs60260809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60927341	1.00[AMR][1000 genomes]
rs73553576	1.00[AMR][1000 genomes]
rs73553590	1.00[AMR][1000 genomes]
rs74107563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107573	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107576	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107579	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107584	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107589	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97876600-97893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97878200-97896600	Weak transcription	HSMMtube	muscle
3	chr13:97879800-97893200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:97880400-97899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:97882000-97893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:97884200-97893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:97884400-97893000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr13:97884600-97895600	Weak transcription	HSMM	muscle
9	chr13:97884600-97896000	Enhancers	Psoas Muscle	Psoas
10	chr13:97885200-97893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr13:97885800-97893600	Weak transcription	Thymus	Thymus
12	chr13:97886200-97907200	Weak transcription	Fetal Thymus	thymus
13	chr13:97887200-97893800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr13:97887200-97893800	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr13:97887200-97895800	Enhancers	Left Ventricle	heart
16	chr13:97887200-97900000	Weak transcription	Hela-S3	cervix
17	chr13:97887400-97893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:97887400-97896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:97887600-97894200	Enhancers	Small Intestine	intestine
20	chr13:97887600-97896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:97887800-97893400	Weak transcription	Primary T cells from cord blood	blood
22	chr13:97888000-97893000	Enhancers	Brain Cingulate Gyrus	brain
23	chr13:97888200-97894400	Enhancers	Brain Substantia Nigra	brain
24	chr13:97888200-97895800	Enhancers	Right Atrium	heart
25	chr13:97888200-97896400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr13:97888600-97894400	Enhancers	Brain Angular Gyrus	brain
27	chr13:97888600-97894400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr13:97888600-97895400	Enhancers	Colon Smooth Muscle	Colon
29	chr13:97888600-97895600	Weak transcription	Colonic Mucosa	Colon
30	chr13:97888600-97896000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr13:97888600-97896000	Enhancers	Right Ventricle	heart
32	chr13:97888600-97900400	Enhancers	Rectal Smooth Muscle	rectum
33	chr13:97888600-97901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:97888800-97894400	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr13:97889400-97893000	Weak transcription	Fetal Kidney	kidney
36	chr13:97889400-97894400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr13:97889800-97894000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:97890200-97898000	Enhancers	Duodenum Mucosa	Duodenum
39	chr13:97890400-97894000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr13:97890400-97894000	Enhancers	Fetal Intestine Small	intestine
41	chr13:97890400-97898800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr13:97890600-97892800	Enhancers	NHDF-Ad	bronchial
43	chr13:97890600-97893000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr13:97890600-97893000	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr13:97890800-97893200	Enhancers	HepG2	liver
46	chr13:97890800-97893800	Enhancers	Fetal Lung	lung
47	chr13:97890800-97893800	Enhancers	Stomach Smooth Muscle	stomach
48	chr13:97891000-97892600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr13:97891000-97893000	Enhancers	Brain Hippocampus Middle	brain
50	chr13:97891000-97893400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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