Variant report

Variant	rs58889097
Chromosome Location	chr13:97814852-97814853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55677292	1.00[AMR][1000 genomes]
rs55678844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57003068	1.00[AMR][1000 genomes]
rs57797978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58513874	0.91[AFR][1000 genomes]
rs60260809	1.00[AMR][1000 genomes]
rs60927341	1.00[AMR][1000 genomes]
rs73553576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553590	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107563	1.00[AMR][1000 genomes]
rs74107573	1.00[AMR][1000 genomes]
rs74107576	1.00[AMR][1000 genomes]
rs74107579	1.00[AMR][1000 genomes]
rs74107584	1.00[AMR][1000 genomes]
rs74107587	1.00[AMR][1000 genomes]
rs74107589	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97814800-97816200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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