Variant report

Variant	rs74107579
Chromosome Location	chr13:97865562-97865563
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97863456..97868216-chr13:97870122..97874469,4	MCF-7	breast:
2	chr13:97863320..97866050-chr13:97870131..97873643,3	K562	blood:
3	chr13:97762021..97762782-chr13:97864746..97865670,2	K562	blood:
4	chr13:97857393..97860192-chr13:97862596..97865751,4	K562	blood:
5	chr13:97761531..97763400-chr13:97864695..97865888,12	MCF-7	breast:
6	chr13:97864765..97865689-chr13:97996737..97997349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

rs_ID	r²[population]
rs55677292	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55678844	1.00[AMR][1000 genomes]
rs57003068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57797978	1.00[AMR][1000 genomes]
rs58889097	1.00[AMR][1000 genomes]
rs60260809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60927341	1.00[AMR][1000 genomes]
rs73553576	1.00[AMR][1000 genomes]
rs73553590	1.00[AMR][1000 genomes]
rs74107563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107573	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107584	1.00[AMR][1000 genomes]
rs74107587	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107589	1.00[AMR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
2	chr13:97862000-97865600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:97863600-97866600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr13:97863600-97866800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr13:97863600-97866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr13:97863600-97867000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:97863800-97866600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr13:97863800-97866600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr13:97863800-97866800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:97863800-97866800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr13:97863800-97866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr13:97863800-97866800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr13:97863800-97867000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr13:97864000-97866800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr13:97864600-97872800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:97864600-97873800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr13:97864800-97874200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr13:97865000-97866800	Weak transcription	Fetal Thymus	thymus
21	chr13:97865000-97867000	Weak transcription	Dnd41	blood
22	chr13:97865000-97867200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:97865000-97867200	Weak transcription	Placenta	Placenta
24	chr13:97865200-97867000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:97865200-97867000	Weak transcription	HepG2	liver
26	chr13:97865200-97871000	Weak transcription	Brain Substantia Nigra	brain
27	chr13:97865200-97872200	Weak transcription	Stomach Mucosa	stomach
28	chr13:97865400-97866000	Weak transcription	Primary T cells from cord blood	blood
29	chr13:97865400-97867000	Weak transcription	K562	blood
30	chr13:97865400-97867200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr13:97865400-97867200	Weak transcription	GM12878-XiMat	blood
32	chr13:97865400-97867400	Weak transcription	Brain Hippocampus Middle	brain
33	chr13:97865400-97872400	Weak transcription	Brain Anterior Caudate	brain
34	chr13:97865400-97872600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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