Variant report

Variant	rs73553590
Chromosome Location	chr13:97822134-97822135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55677292	1.00[AMR][1000 genomes]
rs55678844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57003068	1.00[AMR][1000 genomes]
rs57797978	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58513874	0.97[AFR][1000 genomes]
rs58889097	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60260809	1.00[AMR][1000 genomes]
rs60927341	1.00[AMR][1000 genomes]
rs73553576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107563	1.00[AMR][1000 genomes]
rs74107573	1.00[AMR][1000 genomes]
rs74107576	1.00[AMR][1000 genomes]
rs74107579	1.00[AMR][1000 genomes]
rs74107584	1.00[AMR][1000 genomes]
rs74107587	1.00[AMR][1000 genomes]
rs74107589	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97816200-97824200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:97816200-97830600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links