Variant report

Variant	rs57076175
Chromosome Location	chr13:53939347-53939348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17058159	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61950261	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950298	0.81[EUR][1000 genomes]
rs61950320	0.84[EUR][1000 genomes]
rs61952466	0.95[ASN][1000 genomes]
rs7335476	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74089354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002469	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1040236	chr13:53928195-53955060	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1051184	chr13:53928195-53956469	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53937600-53939400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:53937800-53939400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:53937800-53939400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:53938000-53939400	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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