Variant report

Variant	rs7335476
Chromosome Location	chr13:53919851-53919852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10507575	0.82[CEU][hapmap]
rs12860364	0.82[CEU][hapmap]
rs17058159	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2806957	0.82[CEU][hapmap]
rs57076175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950261	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950265	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950266	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61952466	0.95[ASN][1000 genomes]
rs74089354	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002469	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563145	1.00[CEU][hapmap]
rs9568828	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53919600-53920000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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