Variant report

Variant	rs61952466
Chromosome Location	chr13:53914562-53914563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17058159	0.92[ASN][1000 genomes]
rs57076175	0.95[ASN][1000 genomes]
rs61950261	0.95[ASN][1000 genomes]
rs61950265	0.95[ASN][1000 genomes]
rs61950266	0.95[ASN][1000 genomes]
rs7335476	0.95[ASN][1000 genomes]
rs74089354	0.95[ASN][1000 genomes]
rs8002469	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2756368	chr13:53824599-53923599	Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53909400-53916800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:53911400-53916800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53912000-53917000	Weak transcription	Brain Germinal Matrix	brain
4	chr13:53914200-53914800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr13:53914400-53918400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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