Variant report

Variant	rs61950261
Chromosome Location	chr13:53925231-53925232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17058159	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57076175	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950265	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61950266	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61952466	0.95[ASN][1000 genomes]
rs7335476	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74089354	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002469	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53924800-53926400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:53925200-53925800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53925200-53925800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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