Variant report

Variant	rs57095980
Chromosome Location	chr1:215249939-215249940
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215125951..215126692-chr1:215249388..215250381,2	MCF-7	breast:
2	chr1:215196838..215197537-chr1:215249583..215250160,2	MCF-7	breast:
3	chr1:215249267..215251952-chr1:215286200..215288230,2	MCF-7	breast:
4	chr1:214981872..214982949-chr1:215249210..215250250,4	MCF-7	breast:
5	chr1:214831928..214832819-chr1:215249703..215250277,2	MCF-7	breast:
6	chr1:215249732..215252476-chr1:215255654..215258556,2	K562	blood:
7	chr1:214833954..214834916-chr1:215249431..215250403,7	MCF-7	breast:
8	chr1:215249022..215252957-chr1:215253448..215258066,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11807547	1.00[AMR][1000 genomes]
rs11808050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59340378	1.00[AMR][1000 genomes]
rs61400564	1.00[AMR][1000 genomes]
rs6696563	1.00[AMR][1000 genomes]
rs74140929	1.00[AMR][1000 genomes]
rs74140930	1.00[AMR][1000 genomes]
rs74140932	1.00[AMR][1000 genomes]
rs74140933	1.00[AMR][1000 genomes]
rs74143645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143650	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143651	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143654	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143655	1.00[AMR][1000 genomes]
rs74143656	1.00[AMR][1000 genomes]
rs74143658	1.00[AMR][1000 genomes]
rs7548395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215229400-215253000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215248200-215252600	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links