Variant report

Variant	rs74143651
Chromosome Location	chr1:215260061-215260062
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11807547	1.00[AMR][1000 genomes]
rs11808050	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57095980	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59340378	1.00[AMR][1000 genomes]
rs61400564	1.00[AMR][1000 genomes]
rs6696563	1.00[AMR][1000 genomes]
rs74140929	1.00[AMR][1000 genomes]
rs74140930	1.00[AMR][1000 genomes]
rs74140932	1.00[AMR][1000 genomes]
rs74140933	1.00[AMR][1000 genomes]
rs74143645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143654	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143655	1.00[AMR][1000 genomes]
rs74143656	1.00[AMR][1000 genomes]
rs74143658	1.00[AMR][1000 genomes]
rs7548395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215257400-215260600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:215257800-215260800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:215258200-215277600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:215258400-215261000	Weak transcription	Osteobl	bone
5	chr1:215258400-215265000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:215258400-215267400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:215258400-215277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:215258800-215261200	Weak transcription	NHLF	lung
9	chr1:215259600-215260400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:215259600-215261400	Enhancers	Fetal Brain Male	brain
11	chr1:215259800-215260200	ZNF genes & repeats	Gastric	stomach
12	chr1:215259800-215261000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:215260000-215260200	Genic enhancers	NHDF-Ad	bronchial
14	chr1:215260000-215260400	Flanking Active TSS	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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