Variant report

Variant	rs74143658
Chromosome Location	chr1:215281219-215281220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11807547	1.00[AMR][1000 genomes]
rs11808050	1.00[AMR][1000 genomes]
rs57095980	1.00[AMR][1000 genomes]
rs59340378	1.00[AMR][1000 genomes]
rs61400564	1.00[AMR][1000 genomes]
rs6696563	1.00[AMR][1000 genomes]
rs74140929	1.00[AMR][1000 genomes]
rs74140930	1.00[AMR][1000 genomes]
rs74140932	1.00[AMR][1000 genomes]
rs74140933	1.00[AMR][1000 genomes]
rs74143645	1.00[AMR][1000 genomes]
rs74143650	1.00[AMR][1000 genomes]
rs74143651	1.00[AMR][1000 genomes]
rs74143654	1.00[AMR][1000 genomes]
rs74143655	1.00[AMR][1000 genomes]
rs74143656	1.00[AMR][1000 genomes]
rs7548395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215278000-215285200	Weak transcription	NHDF-Ad	bronchial
2	chr1:215278000-215285400	Weak transcription	Osteobl	bone
3	chr1:215278200-215286600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:215279800-215281400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:215280800-215281600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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