Variant report

Variant	rs74140930
Chromosome Location	chr1:215307784-215307785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11807547	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11808050	1.00[AMR][1000 genomes]
rs57095980	1.00[AMR][1000 genomes]
rs59340378	1.00[AMR][1000 genomes]
rs61400564	1.00[AMR][1000 genomes]
rs6696563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74140932	1.00[AMR][1000 genomes]
rs74140933	1.00[AMR][1000 genomes]
rs74143645	1.00[AMR][1000 genomes]
rs74143650	1.00[AMR][1000 genomes]
rs74143651	1.00[AMR][1000 genomes]
rs74143654	1.00[AMR][1000 genomes]
rs74143655	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143656	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74143658	1.00[AMR][1000 genomes]
rs7548395	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215305800-215314600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215306000-215313600	Weak transcription	Osteobl	bone
3	chr1:215307200-215313600	Weak transcription	NHDF-Ad	bronchial
4	chr1:215307400-215315000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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