Variant report

Variant	rs57127254
Chromosome Location	chr3:111543755-111543756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6797063	0.87[AMR][1000 genomes]
rs6802653	1.00[AMR][1000 genomes]
rs72936478	1.00[AMR][1000 genomes]
rs72936480	1.00[AMR][1000 genomes]
rs72936483	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936491	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72949192	0.87[AMR][1000 genomes]
rs72951014	1.00[AMR][1000 genomes]
rs9859320	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111539600-111545400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111541000-111544200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:111541000-111550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
5	chr3:111542000-111543800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:111542000-111545600	Weak transcription	Lung	lung
7	chr3:111542800-111544400	Strong transcription	Liver	Liver
8	chr3:111543400-111543800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:111543400-111544200	Weak transcription	Placenta	Placenta
10	chr3:111543600-111546600	Weak transcription	Adipose Nuclei	Adipose
11	chr3:111543600-111546600	Weak transcription	Fetal Heart	heart
12	chr3:111543600-111546600	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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