Variant report

Variant	rs9859320
Chromosome Location	chr3:111532100-111532101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57127254	0.87[AMR][1000 genomes]
rs6802653	0.87[AMR][1000 genomes]
rs72936478	0.87[AMR][1000 genomes]
rs72936480	0.87[AMR][1000 genomes]
rs72936483	0.87[AMR][1000 genomes]
rs72936490	0.87[AMR][1000 genomes]
rs72951014	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111514600-111533200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:111526400-111533000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:111526600-111532200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:111526600-111532200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:111526600-111532200	Enhancers	NHEK	skin
6	chr3:111526600-111533000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:111526600-111533000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:111526800-111532200	Enhancers	HSMM	muscle
9	chr3:111526800-111532600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:111529000-111537800	Weak transcription	Liver	Liver
11	chr3:111529400-111534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:111531000-111535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:111531200-111532200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:111531400-111532800	Enhancers	Fetal Lung	lung
15	chr3:111531600-111532200	Weak transcription	HSMMtube	muscle
16	chr3:111531600-111532800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:111531600-111536000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr3:111531800-111533000	Enhancers	Stomach Mucosa	stomach
19	chr3:111531800-111534600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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