Variant report

Variant	rs72936483
Chromosome Location	chr3:111541595-111541596
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57127254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6797063	0.87[AMR][1000 genomes]
rs6802653	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936478	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936480	1.00[AMR][1000 genomes]
rs72936490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936491	0.85[AMR][1000 genomes]
rs72949192	0.87[AMR][1000 genomes]
rs72951014	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9859320	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111533000-111542800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:111536600-111541800	Weak transcription	Gastric	stomach
3	chr3:111538800-111541600	Enhancers	Fetal Heart	heart
4	chr3:111539000-111542800	Weak transcription	Liver	Liver
5	chr3:111539600-111545400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:111540000-111541800	Weak transcription	Right Ventricle	heart
7	chr3:111540200-111541800	Weak transcription	Left Ventricle	heart
8	chr3:111540200-111543200	Weak transcription	Right Atrium	heart
9	chr3:111540800-111541800	Weak transcription	HSMMtube	muscle
10	chr3:111541000-111544200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:111541000-111550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
13	chr3:111541400-111543400	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links