Variant report

Variant	rs6802653
Chromosome Location	chr3:111538020-111538021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10451860	1.00[MEX][hapmap]
rs1709249	1.00[MEX][hapmap]
rs1875133	1.00[MEX][hapmap]
rs57127254	1.00[AMR][1000 genomes]
rs6797063	0.87[AMR][1000 genomes]
rs72936478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936480	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936483	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72936490	1.00[AMR][1000 genomes]
rs72936491	0.85[AMR][1000 genomes]
rs72949192	0.87[AMR][1000 genomes]
rs72951014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9859320	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111533000-111542800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:111536200-111538400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111536600-111539000	Weak transcription	Stomach Mucosa	stomach
4	chr3:111536600-111541800	Weak transcription	Gastric	stomach
5	chr3:111537800-111539000	ZNF genes & repeats	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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