Variant report

Variant	rs57164113
Chromosome Location	chr6:36659337-36659338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36659288..36661808-chr6:36668728..36671591,2	MCF-7	breast:
2	chr6:36658059..36660618-chr6:36709664..36711830,2	MCF-7	breast:
3	chr6:36658024..36659928-chr6:36660591..36663281,3	MCF-7	breast:
4	chr6:36644981..36649007-chr6:36657170..36660306,4	K562	blood:
5	chr6:36646719..36650011-chr6:36657952..36660291,4	MCF-7	breast:
6	chr6:36581224..36597272-chr6:36642199..36659412,120	MCF-7	breast:
7	chr6:36658841..36660500-chr6:36665313..36667930,3	MCF-7	breast:
8	chr6:36659068..36661515-chr6:36679186..36681005,2	MCF-7	breast:
9	chr6:36658383..36660114-chr6:36663933..36665549,2	MCF-7	breast:
10	chr6:36650316..36652178-chr6:36659155..36660681,2	MCF-7	breast:
11	chr6:36560786..36563777-chr6:36658792..36660872,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000263894	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3176328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57490249	1.00[ASN][1000 genomes]
rs57797466	1.00[ASN][1000 genomes]
rs58342338	1.00[ASN][1000 genomes]
rs58470960	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59197383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59839172	1.00[ASN][1000 genomes]
rs60078101	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60435400	1.00[ASN][1000 genomes]
rs61224207	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61294044	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61555611	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6907921	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6912480	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6916443	1.00[ASN][1000 genomes]
rs6932181	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7774093	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36650800-36659600	Weak transcription	Right Atrium	heart
2	chr6:36651200-36660000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:36654200-36659400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:36654600-36659400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:36654600-36659600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr6:36654600-36659600	Weak transcription	Fetal Thymus	thymus
7	chr6:36654800-36659600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:36654800-36660200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:36655000-36659400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:36655000-36659400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:36655000-36659600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:36655000-36659600	Weak transcription	Right Ventricle	heart
13	chr6:36655000-36660000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:36655000-36660000	Weak transcription	Pancreas	Pancrea
15	chr6:36655000-36660200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:36655000-36660200	Weak transcription	Thymus	Thymus
17	chr6:36655000-36660400	Weak transcription	Stomach Mucosa	stomach
18	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:36655200-36659400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:36655200-36659400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:36655200-36659400	Weak transcription	Esophagus	oesophagus
22	chr6:36655200-36659400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:36655200-36660000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:36655200-36660200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:36655200-36660400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:36655200-36660400	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:36655200-36660800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:36655200-36661200	Weak transcription	Aorta	Aorta
29	chr6:36655200-36669400	Weak transcription	Gastric	stomach
30	chr6:36655400-36659600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr6:36655400-36660000	Weak transcription	Dnd41	blood
32	chr6:36655400-36660400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr6:36655600-36659400	Weak transcription	Fetal Intestine Large	intestine
34	chr6:36655600-36659600	Weak transcription	HSMMtube	muscle
35	chr6:36655600-36660000	Weak transcription	Colonic Mucosa	Colon
36	chr6:36655600-36660200	Weak transcription	Adipose Nuclei	Adipose
37	chr6:36655600-36660200	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:36655600-36660200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:36655600-36660800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:36655600-36660800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:36655600-36661000	Weak transcription	HSMM	muscle
42	chr6:36655600-36663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:36655800-36660200	Weak transcription	NHDF-Ad	bronchial
44	chr6:36655800-36660600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:36655800-36660800	Weak transcription	Lung	lung
46	chr6:36656000-36659400	Weak transcription	Placenta	Placenta
47	chr6:36656000-36660600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:36656000-36661000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:36656200-36659600	Weak transcription	Left Ventricle	heart
50	chr6:36656200-36659800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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