Variant report

Variant	rs59839172
Chromosome Location	chr6:36675609-36675610
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57164113	1.00[ASN][1000 genomes]
rs57490249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57797466	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58342338	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58470960	0.80[ASN][1000 genomes]
rs59197383	1.00[ASN][1000 genomes]
rs60078101	0.80[ASN][1000 genomes]
rs60435400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61224207	0.80[ASN][1000 genomes]
rs61294044	0.80[ASN][1000 genomes]
rs61555611	0.80[ASN][1000 genomes]
rs6907921	0.80[ASN][1000 genomes]
rs6912480	0.80[ASN][1000 genomes]
rs6916443	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932181	0.80[ASN][1000 genomes]
rs7774093	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
2	chr6:36669800-36681400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:36670000-36682200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:36671000-36676200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36671400-36682000	Weak transcription	Spleen	Spleen
6	chr6:36671800-36694000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr6:36672200-36681400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:36672200-36693600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:36672400-36679400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:36674000-36675800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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