Variant report

Variant	rs58470960
Chromosome Location	chr6:36637632-36637633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36633841..36635669-chr6:36637312..36639563,2	K562	blood:
2	chr6:36524196..36527132-chr6:36635202..36638000,2	MCF-7	breast:
3	chr6:36637280..36638995-chr6:36645495..36647593,2	K562	blood:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3176328	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57164113	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57490249	0.80[ASN][1000 genomes]
rs57797466	0.80[ASN][1000 genomes]
rs58342338	0.80[ASN][1000 genomes]
rs59197383	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59839172	0.80[ASN][1000 genomes]
rs60078101	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60435400	0.80[ASN][1000 genomes]
rs61224207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61294044	1.00[ASN][1000 genomes]
rs61555611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907921	1.00[ASN][1000 genomes]
rs6912480	1.00[ASN][1000 genomes]
rs6916443	0.80[ASN][1000 genomes]
rs6932181	1.00[ASN][1000 genomes]
rs7774093	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv602946	chr6:36633160-36641478	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv602947	chr6:36637597-36641157	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36631000-36644000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:36632000-36638800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:36633200-36640200	Enhancers	HepG2	liver
4	chr6:36633600-36637800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:36633800-36637800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:36634200-36637800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:36634600-36638000	Enhancers	Fetal Muscle Leg	muscle
8	chr6:36634800-36638200	Enhancers	Fetal Muscle Trunk	muscle
9	chr6:36635000-36637800	Enhancers	HSMMtube	muscle
10	chr6:36635200-36643800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:36635400-36639600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:36635400-36644000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:36635400-36645600	Weak transcription	Small Intestine	intestine
14	chr6:36635600-36644000	Weak transcription	Hela-S3	cervix
15	chr6:36635800-36639800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:36636000-36640800	Enhancers	Fetal Intestine Small	intestine
17	chr6:36636400-36643800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:36636400-36643800	Weak transcription	NH-A	brain
19	chr6:36636800-36641000	Enhancers	Fetal Intestine Large	intestine
20	chr6:36637000-36637800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:36637000-36638000	Weak transcription	Ovary	ovary
22	chr6:36637000-36638600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:36637000-36643800	Weak transcription	Osteobl	bone
24	chr6:36637200-36638200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:36637200-36638400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:36637200-36641600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:36637200-36641600	Weak transcription	GM12878-XiMat	blood
28	chr6:36637200-36643600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:36637200-36643800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:36637200-36643800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:36637200-36643800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:36637200-36643800	Weak transcription	HSMM	muscle
33	chr6:36637400-36637800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:36637400-36639800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:36637400-36642600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:36637600-36637800	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:36637600-36637800	Enhancers	Fetal Kidney	kidney

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