Variant report

Variant	rs6932181
Chromosome Location	chr6:36629182-36629183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36561045..36564139-chr6:36628780..36632621,3	K562	blood:
2	chr6:36628763..36632041-chr6:36634655..36636899,4	MCF-7	breast:
3	chr6:36618015..36619715-chr6:36627253..36629685,2	MCF-7	breast:
4	chr6:36586935..36591070-chr6:36628683..36631077,3	K562	blood:
5	chr6:36628825..36632720-chr6:36633397..36637228,8	MCF-7	breast:
6	chr6:36560914..36563599-chr6:36627068..36629393,2	K562	blood:
7	chr6:36627657..36630518-chr6:36646219..36647988,2	K562	blood:
8	chr6:36602002..36604022-chr6:36629125..36630980,2	MCF-7	breast:
9	chr6:36623725..36625807-chr6:36629087..36632013,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000263894	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3176328	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57164113	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57490249	0.80[ASN][1000 genomes]
rs57797466	0.80[ASN][1000 genomes]
rs58342338	0.80[ASN][1000 genomes]
rs58470960	1.00[ASN][1000 genomes]
rs59197383	0.80[ASN][1000 genomes]
rs59839172	0.80[ASN][1000 genomes]
rs60078101	1.00[ASN][1000 genomes]
rs60435400	0.80[ASN][1000 genomes]
rs61224207	1.00[ASN][1000 genomes]
rs61294044	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61555611	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6907921	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916443	0.80[ASN][1000 genomes]
rs7774093	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36626200-36629600	Weak transcription	Hela-S3	cervix
2	chr6:36627400-36629800	Bivalent Enhancer	Fetal Thymus	thymus
3	chr6:36627800-36634000	Weak transcription	HMEC	breast
4	chr6:36627800-36634000	Weak transcription	HSMM	muscle
5	chr6:36628000-36631200	Enhancers	Primary B cells from cord blood	blood
6	chr6:36628200-36636600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:36628400-36629200	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr6:36628400-36629200	Bivalent/Poised TSS	Fetal Brain Female	brain
9	chr6:36628400-36629200	Enhancers	Left Ventricle	heart
10	chr6:36628400-36629200	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr6:36628600-36629200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr6:36628600-36629200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:36628600-36629200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
14	chr6:36628600-36629200	Enhancers	Placenta	Placenta
15	chr6:36628600-36629200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
16	chr6:36628600-36629200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
17	chr6:36628600-36629200	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr6:36628600-36629400	Enhancers	Pancreas	Pancrea
19	chr6:36628600-36629600	Enhancers	Spleen	Spleen
20	chr6:36628600-36631200	Enhancers	Gastric	stomach
21	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
22	chr6:36628800-36629200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
24	chr6:36628800-36629200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
26	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr6:36628800-36629200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:36628800-36629200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:36628800-36629200	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
31	chr6:36628800-36629200	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr6:36628800-36629200	Flanking Active TSS	Fetal Heart	heart
33	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
34	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
35	chr6:36628800-36629200	Bivalent Enhancer	Fetal Muscle Leg	muscle
36	chr6:36628800-36629200	Flanking Active TSS	Rectal Smooth Muscle	rectum
37	chr6:36628800-36629200	Enhancers	Right Atrium	heart
38	chr6:36628800-36629200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
39	chr6:36628800-36629200	Flanking Active TSS	GM12878-XiMat	blood
40	chr6:36628800-36629200	Flanking Active TSS	K562	blood
41	chr6:36628800-36629200	Bivalent Enhancer	NHEK	skin
42	chr6:36628800-36629200	Bivalent Enhancer	NHLF	lung
43	chr6:36628800-36629800	Bivalent Enhancer	Primary T cells from cord blood	blood
44	chr6:36628800-36630200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:36628800-36631200	Enhancers	Thymus	Thymus
46	chr6:36629000-36629200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
47	chr6:36629000-36629200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:36629000-36629200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:36629000-36629200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
50	chr6:36629000-36629200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell

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