Variant report

Variant	rs57167764
Chromosome Location	chr10:54723155-54723156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56983999	1.00[AMR][1000 genomes]
rs61135358	1.00[AMR][1000 genomes]
rs61307700	1.00[AMR][1000 genomes]
rs73346352	1.00[AMR][1000 genomes]
rs73348081	1.00[AMR][1000 genomes]
rs73348297	1.00[AMR][1000 genomes]
rs73348300	1.00[AMR][1000 genomes]
rs73350009	1.00[AMR][1000 genomes]
rs73350012	1.00[AMR][1000 genomes]
rs73350111	1.00[AMR][1000 genomes]
rs73350123	1.00[AMR][1000 genomes]
rs73350124	1.00[AMR][1000 genomes]
rs73350127	1.00[AMR][1000 genomes]
rs73350197	1.00[AMR][1000 genomes]
rs73352213	1.00[AMR][1000 genomes]
rs73352214	1.00[AMR][1000 genomes]
rs73353649	1.00[AMR][1000 genomes]
rs73353652	1.00[AMR][1000 genomes]
rs73353654	1.00[AMR][1000 genomes]
rs73353665	1.00[AMR][1000 genomes]
rs73353667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv831877	chr10:54565135-54764638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv467200	chr10:54585401-54726056	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv550905	chr10:54585401-54726056	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1041940	chr10:54621342-54737528	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv508584	chr10:54704765-54747382	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54712200-54724200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:54716800-54725200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:54717200-54724400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:54717600-54724400	Weak transcription	Fetal Intestine Large	intestine
5	chr10:54720400-54724200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:54720400-54725200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:54720400-54728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:54720600-54725000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:54721400-54725200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:54722400-54724000	Active TSS	H1 Cell Line	embryonic stem cell
11	chr10:54722600-54723200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr10:54722800-54723400	Enhancers	Fetal Intestine Small	intestine
13	chr10:54722800-54725000	Active TSS	Fetal Kidney	kidney
14	chr10:54723000-54723200	Enhancers	Fetal Stomach	stomach
15	chr10:54723000-54723200	Enhancers	Ovary	ovary
16	chr10:54723000-54723400	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr10:54723000-54723400	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr10:54723000-54723400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:54723000-54725600	Weak transcription	H9 Cell Line	embryonic stem cell

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