Variant report

Variant	rs73353652
Chromosome Location	chr10:54764725-54764726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:54764008..54766836-chr10:54772750..54774326,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs28865980	0.94[AFR][1000 genomes]
rs56983999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57167764	1.00[AMR][1000 genomes]
rs57494549	0.94[AFR][1000 genomes]
rs61135358	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61307700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334909	1.00[AFR][1000 genomes]
rs73334915	0.80[AFR][1000 genomes]
rs73334922	0.83[AFR][1000 genomes]
rs73346352	1.00[AMR][1000 genomes]
rs73348081	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348297	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73348300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349812	0.94[AFR][1000 genomes]
rs73350009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350127	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350197	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352214	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73353667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895404	chr10:54545590-54850707	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1043809	chr10:54645158-54860817	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540627	chr10:54645158-54860817	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv467202	chr10:54735164-54830687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550907	chr10:54735164-54830687	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54757200-54766400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:54759800-54767200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:54760200-54765800	Weak transcription	Stomach Mucosa	stomach
4	chr10:54760800-54764800	Weak transcription	Liver	Liver
5	chr10:54760800-54765600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:54761000-54764800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:54761000-54766000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:54763200-54765000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:54763400-54765400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:54763400-54765800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr10:54764400-54771200	Enhancers	HepG2	liver
12	chr10:54764600-54765200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:54764600-54765200	Enhancers	Fetal Thymus	thymus
14	chr10:54764600-54765600	Weak transcription	Fetal Intestine Small	intestine
15	chr10:54764600-54765600	Weak transcription	Fetal Kidney	kidney

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